Browse Element(s) Details


OsAffx.5568.1.S1_at

Description tigr:9635.m03847
TID=OsAffx.5568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3863011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein
LOC_Os07g38680Os.47130.4.A1_x_at4/117+23224138..23224461retrotransposon protein, putative, unclassified
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5568.1.S1_at--1064--4171Chr07:23201181..23201205 (25 bp)
CCCTCGTCGCGTCAGCGGCAGCCGA
LOC_Os07g38630
OsAffx.5568.1.S1_at--867--4211Chr07:23201237..23201553 (25 bp)
GCCGCCCCCGCGTTTAAAGAACATG
LOC_Os07g38630
OsAffx.5568.1.S1_at--964--4191Chr07:23201242..23201558 (25 bp)
CCCCGCGTTTAAAGAACATGAGTAT
LOC_Os07g38630
OsAffx.5568.1.S1_at--341--10331Chr07:23201541..23201565 (25 bp)
TTTAAAGAACATGAGTATCGCGTAC
LOC_Os07g38630
OsAffx.5568.1.S1_at--123--2351Chr07:23201544..23201568 (25 bp)
AAAGAACATGAGTATCGCGTACTAC
LOC_Os07g38630
OsAffx.5568.1.S1_at--578--1431Chr07:23201546..23201570 (25 bp)
AGAACATGAGTATCGCGTACTACAT
LOC_Os07g38630
OsAffx.5568.1.S1_at--758--691Chr07:23201551..23201575 (25 bp)
ATGAGTATCGCGTACTACATGGTGA
LOC_Os07g38630
OsAffx.5568.1.S1_at--3--6091Chr07:23201553..23201577 (25 bp)
GAGTATCGCGTACTACATGGTGACA
LOC_Os07g38630
OsAffx.5568.1.S1_at--358--1191Chr07:23201554..23201578 (25 bp)
AGTATCGCGTACTACATGGTGACAC
LOC_Os07g38630
OsAffx.5568.1.S1_at--333--6911Chr07:23201555..23201579 (25 bp)
GTATCGCGTACTACATGGTGACACT
LOC_Os07g38630
OsAffx.5568.1.S1_at--381--10151Chr07:23201556..23201580 (25 bp)
TATCGCGTACTACATGGTGACACTT
LOC_Os07g38630
Target Sequence 
CCCTCGTCGCGTCAGCGGCAGCCGACCACGCGCCGGCACCGGCGCCCGTCTCCGACGCCGCCCCCGCGTTTAAAGAACAT
GAGTATCGCGTACTACATGGTGACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis