Browse Element(s) Details


Os.5497.1.S1_a_at

Description gb:AK072835.1
DB_XREF= gi:32982858
TID=Os.5497.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134F17, full insert sequence.
FL= gb:AK104154.1 gb:AK104308.1 gb:AK072835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3862010/11root border cell-specific protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5497.1.S1_a_at--970--1091Chr07:23194590..23194614 (25 bp)
AGTGGACCCAATATCTCAATTCTCA
LOC_Os07g38620
Os.5497.1.S1_a_at--1010--2611NONE
AACCCCTATTACGAGCCACATGAAT
NONE
Os.5497.1.S1_a_at--91--51Chr07:23194416..23194440 (25 bp)
ATTGTGCAATACTCAACCACTGTCA
LOC_Os07g38620
Os.5497.1.S1_a_at--603--7731Chr07:23193544..23193568 (25 bp)
GGTGGACTTTGCTTACATGCTTGAT
LOC_Os07g38620
Os.5497.1.S1_a_at--423--2871Chr07:23193068..23193092 (25 bp)
AAGTGTTCTGAAGCTGCGTATCCCC
LOC_Os07g38620
Os.5497.1.S1_a_at--1110--10631Chr07:23193043..23193067 (25 bp)
TTCCCTAGGCGTGCACAGGACAGGA
LOC_Os07g38620
Os.5497.1.S1_a_at--163--631Chr07:23192846..23192870 (25 bp)
ATGCTCCAAGCTGCAAAAGCCTCAT
LOC_Os07g38620
Os.5497.1.S1_a_at--245--7151Chr07:23192820..23192844 (25 bp)
GTCTTCTGCTGAATGAATGTCCTGT
LOC_Os07g38620
Os.5497.1.S1_a_at--574--5751Chr07:23192785..23192809 (25 bp)
GACGTCTTTGTCCTTGTAAATGAAA
LOC_Os07g38620
Os.5497.1.S1_a_at--758--2331Chr07:23192759..23192783 (25 bp)
AAAGATGTCCTTTTCGATGAGTTTT
LOC_Os07g38620
Os.5497.1.S1_a_at--328--3031Chr07:23192691..23192715 (25 bp)
AATGCCACAGCTTAACACCGAACAG
LOC_Os07g38620
Target Sequence 
AGTGGACCCAATATCTCAATTCTCAACCCCTATTACGAGCCACATGAATAAGGATCATTCTGATGATACAAAGCTCATTG
TGCAATACTCAACCACTGTCAAGGTGGACTTTGCTTACATGCTTGATGTGGATAGTCTTGGTTTCAATGTGAAGGCGGGC
TATGATGGAAGTGTTCTGAAGCTGCGTATCCCCTTCCCTAGGCGTGCACAGGACAGGAAGGATGTTAAGACACTTATTGT
GGAAATGCTCCAAGCTGCAAAAGCCTCATCGTCTTCTGCTGAATGAATGTCCTGTTCTAGAAAGGGACGTCTTTGTCCTT
GTAAATGAAATAAAGATGTCCTTTTCGATGAGTTTTTTCTGATCTAGGAAATGTCATGTTTTTACACATGATATATCACA
ATGCCACAGCTTAACACCGAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5497.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis