Browse Element(s) Details


Os.25013.1.S1_x_at

Description gb:AK122181.1
DB_XREF= gi:37991827
TID=Os.25013.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149G04, full insert sequence.
FL= gb:AK122181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3858011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38530Os.2221.1.S1_a_at11/117+23144311..23147915Protein kinase domain containing protein, expressed
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25013.1.S1_x_at--124--951Chr07:23170729..23170753 (25 bp)
AGGAAGAACTGCTCTGACTGCTGAA
LOC_Os07g38580
Os.25013.1.S1_x_at--1009--5711Chr07:23170744..23170768 (25 bp)
GACTGCTGAAGATAATGCCCCGCTT
LOC_Os07g38580
Os.25013.1.S1_x_at--42--4211Chr07:23170762..23170786 (25 bp)
CCCGCTTGTCCGAGTTTGTGATAGA
LOC_Os07g38580
Os.25013.1.S1_x_at--383--851Chr07:23171121..23171143 (23 bp)
ATGGCAGAAGTCTCTCAAAGGCTTA
LOC_Os07g38580
Os.25013.1.S1_x_at--272--951Chr07:23171153..23171177 (25 bp)
AGGAAGCTGCCAACAGGTCTGCCAC
LOC_Os07g38580
Os.25013.1.S1_x_at--148--3851Chr07:23171474..23171498 (25 bp)
CTGCATCTGGAGGTTCATCTGGGAC
LOC_Os07g38580
Os.25013.1.S1_x_at--1094--7251Chr07:23171533..23171649 (25 bp)
GTCCATCTTCAGGTTCAGGTTCCAA
LOC_Os07g38580
Os.25013.1.S1_x_at--1001--10131Chr07:23171680..23171704 (25 bp)
TATGCCAGCATGCTTTCCGTGTCAG
LOC_Os07g38580
Os.25013.1.S1_x_at--757--2011Chr07:23171760..23171784 (25 bp)
ACTCACTTATTTTGCTGTTCCATAC
LOC_Os07g38580
Os.25013.1.S1_x_at--651--351Chr07:23171788..23171812 (25 bp)
ATAAGCGTGTGTGCAGCCTGTAGAT
LOC_Os07g38580
Os.25013.1.S1_x_at--737--2491Chr07:23171910..23171934 (25 bp)
AACATGCTTGGATGTCTCTGGAGAA
LOC_Os07g38580
Target Sequence 
AGGAAGAACTGCTCTGACTGCTGAAGATAATGCCCCGCTTGTCCGAGTTTGTGATAGATGCATGGCAGAAGTCTCTCAAA
GGCTTAGCATAGCACAGGAAGCTGCCAACAGGTCTGCCACAGTGCAAAGTCATGAAGATCTTGCAAGAAAACTTAAGGAG
GAAATGGAGAGAAATCGCAAGTCCTCGGGTTCTGCATCTGGAGGTTCATCTGGGACCAGAATGAGGGAAGTTGCATGTCC
TACTTGCACTGTCCATCTTCAGGTTCAGGTTCCAACCTCTGGCTCAGAAACAGTGGAATGTGGGGTATGCCAGCATGCTT
TCCGTGTCAGCGCCAATTGATAAACCGGGAGACAGAGCATGTCTATAGCAATTATTCTGTTTATAACTCACTTATTTTGC
TGTTCCATACATAATAAGCGTGTGTGCAGCCTGTAGATATTTCCTGGTTGTGTTGGTGACCATGACAGGATATACTAGGT
TTTTCTTGTACATGGGTTAATCCTAAAATATATGCTCTAATACTGCTGAAATTGAAACATGCTTGGATGTCTCTGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25013.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis