Browse Element(s) Details


Os.23379.1.A1_at

Description gb:AK071285.1
DB_XREF= gi:32981308
TID=Os.23379.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086D14, full insert sequence.
FL= gb:AK071285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3856011/11Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified
LOC_Os07g38510NANA7+23137587..23140611retrotransposon protein, putative, unclassified
LOC_Os07g38520Os.47130.4.A1_x_at3/117+23141813..23142136retrotransposon protein, putative, unclassified
LOC_Os07g38530Os.2221.1.S1_a_at11/117+23144311..23147915Protein kinase domain containing protein, expressed
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23379.1.A1_at--38--5331Chr07:23161269..23161290 (22 bp)
GAAGTTTTCTTGAACATGCCCTTGG
LOC_Os07g38560
Os.23379.1.A1_at--624--3531Chr07:23161280..23161304 (25 bp)
CATGCCCTTGGAATTGTGTGAGTCA
LOC_Os07g38560
Os.23379.1.A1_at--975--5951Chr07:23161299..23161323 (25 bp)
GAGTCAAGGGATCCTAAGGGCCTTT
LOC_Os07g38560
Os.23379.1.A1_at--1019--2871Chr07:23161314..23161338 (25 bp)
AAGGGCCTTTATAAGCTTGCTCGTG
LOC_Os07g38560
Os.23379.1.A1_at--245--6311Chr07:23161826..23161850 (25 bp)
GATGACCCTTATGAATCACCATTAA
LOC_Os07g38560
Os.23379.1.A1_at--879--2871Chr07:23162409..23162433 (25 bp)
AAGTGGATGGTGTATGCCCTTCACC
LOC_Os07g38560
Os.23379.1.A1_at--1081--791Chr07:23162495..23162519 (25 bp)
ATGGGATGCATCGATCAGCCGGTAG
LOC_Os07g38560
Os.23379.1.A1_at--973--7831Chr07:23162515..23162539 (25 bp)
GGTAGAGTTTTCTCCTCCATATTAG
LOC_Os07g38560
Os.23379.1.A1_at--492--6511Chr07:23162734..23162758 (25 bp)
GATATCCATTTACTTCTGTTCTTAC
LOC_Os07g38560
Os.23379.1.A1_at--81--7511Chr07:23162762..23162786 (25 bp)
GTGGACTTTATACTGTTACTGTTCT
LOC_Os07g38560
Os.23379.1.A1_at--176--5251Chr07:23162794..23162818 (25 bp)
GAATCAGTGCCTGGGCTGCGTACAT
LOC_Os07g38560
Target Sequence 
GAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAA
AATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATNAAAGAAGTGGATGGTG
TATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTNTGCATGATTAGATGGGA
TGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTAC
TTGTTTTTGTTTAGATTGGTTACANGCTTTGATCTACCCATATTCCTTNTTCACTGCACAGCTAATGGAGCTGTGCAATG
ACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCC
ATTTACTTCTGTTCTTACATTGTGGACTTTATACTGTTACTGTTCTTCTACCAGAATCAGTGCCTGGGCTGCGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23379.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis