Browse Element(s) Details


Os.2221.1.S1_a_at

Description gb:AF080436.1
DB_XREF= gi:3450841
GEN=MEK1
TID=Os.2221.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2221 (NCBI UniGene Cluster)
DEF=Oryza sativa mitogen activated protein kinase kinase (MEK1) mRNA, complete cds.
PROD=mitogen activated protein kinase kinase
FL= gb:AF080436.1 gb:AK100426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3853011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified
LOC_Os07g38510NANA7+23137587..23140611retrotransposon protein, putative, unclassified
LOC_Os07g38520Os.47130.4.A1_x_at3/117+23141813..23142136retrotransposon protein, putative, unclassified
LOC_Os07g38530Os.2221.1.S1_a_at11/117+23144311..23147915Protein kinase domain containing protein, expressed
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2221.1.S1_a_at--620--5511Chr07:23146994..23147018 (25 bp)
GAACAAGTTACAGTCTTTTCATATT
LOC_Os07g38530
Os.2221.1.S1_a_at--682--6771Chr07:23147000..23147024 (25 bp)
GTTACAGTCTTTTCATATTGGTAAG
LOC_Os07g38530
Os.2221.1.S1_a_at--752--1471Chr07:23147023..23147047 (25 bp)
AGAATCACAATTTCCGCATACCGAC
LOC_Os07g38530
Os.2221.1.S1_a_at--117--3191Chr07:23147030..23147054 (25 bp)
CAATTTCCGCATACCGACCTGCGAG
LOC_Os07g38530
Os.2221.1.S1_a_at--597--2671Chr07:23147057..23147081 (25 bp)
AAGCCCAGGCGCTAGAGACGCTGAG
LOC_Os07g38530
Os.2221.1.S1_a_at--750--4531Chr07:23147145..23147169 (25 bp)
GCCCGGCATTGTGAGGTTGATGCAC
LOC_Os07g38530
Os.2221.1.S1_a_at--72--8691Chr07:23147154..23147178 (25 bp)
TGTGAGGTTGATGCACAGAGCAGTC
LOC_Os07g38530
Os.2221.1.S1_a_at--1154--9831Chr07:23147260..23147284 (25 bp)
TAAATGCTGTTGATGCCTGAAATGC
LOC_Os07g38530
Os.2221.1.S1_a_at--890--10671Chr07:23147289..23147313 (25 bp)
TTGCCGTGTAAATTCCATAGAGTAT
LOC_Os07g38530
Os.2221.1.S1_a_at--1010--10031Chr07:23147313..23147337 (25 bp)
TAGAGTGTACATTGCTTTGGTTCTT
LOC_Os07g38530
Os.2221.1.S1_a_at--214--10851Chr07:23147329..23147353 (25 bp)
TTGGTTCTTTTTGTATGCAATAATA
LOC_Os07g38530
Target Sequence 
GAACAAGTTACAGTCTTTTCATATTGGTAAGAATCACAATTTCCGCATACCGACCTGCGAGCGAAGCCCAGGCGCTAGAG
ACGCTGAGGAGGACCCTGACATTTTTAATNTAGCGTACCATAGCCGGCACCCCGATCCAGGAGCCCAAAGGGCCCGGCAT
TGTGAGGTTGATGCACAGAGCAGTCCNGATNGTCATGTTTACAGNTAGGAGTTANTACACAGGAGCTCAGCTGCCAACAA
ATNTCCCAAGAACAAAATNTGTAACCCTAAATGCTGTTGATGCCTGAAATGCTTTNTTGCCGTGTAAATTCCATAGAGTA
TAGAGTGTACATTGCTTTGGTTCTTTTTGTATGCAATAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2221.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis