Browse Element(s) Details


Os.55353.1.S1_at

Description gb:AK107923.1
DB_XREF= gi:32993132
TID=Os.55353.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H06, full insert sequence.
FL= gb:AK107923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3869011/11Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g386601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein
LOC_Os07g38680Os.47130.4.A1_x_at4/117+23224138..23224461retrotransposon protein, putative, unclassified
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g38700OsAffx.5569.1.S1_at11/117+23226628..23227611hypothetical protein
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein
LOC_Os07g38720OsAffx.28816.1.S1_at11/117+23233955..23234500hypothetical protein
LOC_Os07g38730Os.9504.1.S1_at11/117+23242103..23245524Tubulin alpha-1 chain, putative, expressed
LOC_Os07g38740Os.57300.1.S1_at10/117+23246386..23246953expressed protein
LOC_Os07g38750OsAffx.16617.1.S1_at11/117+23249643..23250590AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016925biological_processprotein sumoylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55353.1.S1_at--507--731Chr07:23225753..23225777 (25 bp)
ATGTTCGGCCGGTCTGGCATCACGG
LOC_Os07g38690
Os.55353.1.S1_at--261--7291Chr07:23225829..23225853 (25 bp)
GTGCCGGAGAGTACGTCACGCTGAA
LOC_Os07g38690
Os.55353.1.S1_at--859--3852Chr07:23225918..23225942 (25 bp)
CTGATGGACTTCTACTACGACCGCG
LOC_Os07g38690
Os.55353.1.S1_at--429--1651Chr07:23225958..23225982 (25 bp)
AGCGCGGCACGGGTCGGTTCCTCTA
LOC_Os07g38690
Os.55353.1.S1_at--696--8111Chr07:23226034..23226058 (25 bp)
GGACGGTGATGAGGTCGACTTCTTC
LOC_Os07g38690
Os.55353.1.S1_at--560--4931Chr07:23226080..23226104 (25 bp)
GCTTGATCCGGATGGGCTCCTGCTC
LOC_Os07g38690
Os.55353.1.S1_at--383--511Chr07:23226106..23226130 (25 bp)
ATCGTCGATGATCGCGTCGTAGCTT
LOC_Os07g38690
Os.55353.1.S1_at--834--7191Chr07:23226121..23226145 (25 bp)
GTCGTAGCTTGTTCCTGGCAGTTGT
LOC_Os07g38690
Os.55353.1.S1_at--902--1291Chr07:23226229..23226253 (25 bp)
AGATGCGACGCTTGTAATTTTTCCA
LOC_Os07g38690
Os.55353.1.S1_at--830--10291Chr07:23226248..23226272 (25 bp)
TTTCCAGTACTTCTGTCTCATCCAA
LOC_Os07g38690
Os.55353.1.S1_at--488--9471Chr07:23226259..23226283 (25 bp)
TCTGTCTCATCCAAGTAATCTCGAA
LOC_Os07g38690
Target Sequence 
ATGTTCGGCCGGTCTGGCATCACGGCGGCGGTGAAGGTGGAGGAGGAGGACGACGGGAAGACGCCGGCGGCCAAGCGTGC
CGGAGAGTACGTCACGCTGAAGGTGCAGGACACCGACGGCCGCGCCGTCTACCGCACCATGCGGTGGACGGAGCAGCTGC
AGGGCCTGATGGACTTCTACTACGACCGCGCGCATGGCCGGGTGCAGCGCGGCACGGGTCGGTTCCTCTACGACGGCCGC
CGGCTGAGCGGCTGGCAGACGCCGGCGGAGCTCGACATGGAGGACGGTGATGAGGTCGACTTCTTCGAGGAGCTGATCGG
TGGCGCCGCTTGATCCGGATGGGCTCCTGCTCCATCGTCGATGATCGCGTCGTAGCTTGTTCCTGGCAGTTGTGGACTTG
TAATTGTGTACTGGTTGTGGAGAACCAGAGTACACTAGGTTTGGATGATAAGTGTTTTTTCATTTTGGTGTTAAGCAGAT
GCGACGCTTGTAATTTTTCCAGTACTTCTGTCTCATCCAAGTAATCTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis