Browse Element(s) Details


OsAffx.16617.1.S1_at

Description tigr:9635.m03860
TID=OsAffx.16617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AP2 domain containing protein RAP2.11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3875011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g38700OsAffx.5569.1.S1_at11/117+23226628..23227611hypothetical protein
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein
LOC_Os07g38720OsAffx.28816.1.S1_at11/117+23233955..23234500hypothetical protein
LOC_Os07g38730Os.9504.1.S1_at11/117+23242103..23245524Tubulin alpha-1 chain, putative, expressed
LOC_Os07g38740Os.57300.1.S1_at10/117+23246386..23246953expressed protein
LOC_Os07g38750OsAffx.16617.1.S1_at11/117+23249643..23250590AP2 domain containing protein
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class
LOC_Os07g38790Os.8390.1.S1_s_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38790OsAffx.16618.1.S1_x_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16617.1.S1_at--145--8411Chr07:23250137..23250161 (25 bp)
GGCGCCGCATCCAAGAAGAGGTCCA
LOC_Os07g38750
OsAffx.16617.1.S1_at--390--9211Chr07:23250128..23250152 (25 bp)
TCCAAGAAGAGGTCCACCACGGCGG
LOC_Os07g38750
OsAffx.16617.1.S1_at--342--2651Chr07:23250075..23250099 (25 bp)
AACCACAAGCAATAGCAATAGCGAT
LOC_Os07g38750
OsAffx.16617.1.S1_at--428--1131Chr07:23250041..23250065 (25 bp)
AGTGCTTGTGGTGGCTCGAGCAGCA
LOC_Os07g38750
OsAffx.16617.1.S1_at--782--1931Chr07:23250005..23250029 (25 bp)
ACGGACAGCTGCGACGGCGCCGTGA
LOC_Os07g38750
OsAffx.16617.1.S1_at--767--1811Chr07:23249947..23249971 (25 bp)
ACGCCAGCGAGGTGTACCGGCCGGA
LOC_Os07g38750
OsAffx.16617.1.S1_at--653--4211Chr07:23249905..23249929 (25 bp)
CCGAGGAGTTCGATTCTTGGATGTT
LOC_Os07g38750
OsAffx.16617.1.S1_at--999--9351Chr07:23249896..23249920 (25 bp)
TCGATTCTTGGATGTTCGACACGGC
LOC_Os07g38750
OsAffx.16617.1.S1_at--657--4031Chr07:23249863..23249887 (25 bp)
CGTTCCCAGAGCTGGACAGCTTCGC
LOC_Os07g38750
OsAffx.16617.1.S1_at--450--651Chr07:23249705..23249729 (25 bp)
ATGAACGGCCTGCAGGAGTACTTCG
LOC_Os07g38750
OsAffx.16617.1.S1_at--273--3931Chr07:23249700..23249724 (25 bp)
CGGCCTGCAGGAGTACTTCGACAAG
LOC_Os07g38750
Target Sequence 
GGCGCCGCATCCAAGAAGAGGTCCACCACGGCGGCGGCGGCGGCGGCCACTCCGACGATCACAACCACAAGCAATAGCAA
TAGCGATGGTGCGGGTAGTGCTTGTGGTGGCTCGAGCAGCAGCAGCAGCAGCACGGACAGCTGCGACGGCGCCGTGAAGC
AAGGCGGCGGCGGCGGCGGCGCACCAACGGACGCCAGCGAGGTGTACCGGCCGGACTTCGTCCACGCGGGCGCCGAGGAG
TTCGATTCTTGGATGTTCGACACGGCGTTCGGCCCGTTCCCAGAGCTGGACAGCTTCGCCGCCGTCGACGCCGTCACGCC
ACCGCCAGCAACGGCGTCGCCGGAGGAGTCAAGCGCCGGCACGCCGCCGGTCGAGATGGCGGAGTTCGAGCGGATAAAGG
TGGAGCGGCGGATCTCGGCGTCCCTGTACGCCATGAACGGCCTGCAGGAGTACTTCGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis