Browse Element(s) Details


Os.8390.1.S1_s_at

Description gb:AU033041
DB_XREF= gi:3769014
DB_XREF=AU033041
CLONE=S1612_6Z
TID=Os.8390.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8390 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3879011/11Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38750OsAffx.16617.1.S1_at11/117+23249643..23250590AP2 domain containing protein
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class
LOC_Os07g38790Os.8390.1.S1_s_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38790OsAffx.16618.1.S1_x_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38800Os.12660.1.S2_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38800Os.12660.1.S1_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38810Os.17201.1.S1_at11/117+23280907..23283254lectin protein kinase, putative, expressed
LOC_Os07g38820OsAffx.28817.1.S1_at11/117+23287584..23290095Lectin receptor-type protein kinase, putative
LOC_Os07g38830Os.27477.1.S1_at11/117+23291668..23295109hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563molecular_functionbeta-N-acetylhexosaminidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8390.1.S1_s_at--611--2551Chr07:23272728..23272752 (25 bp)
AACCGACCCGTATACGTGCGCTCAA
LOC_Os07g38790
Os.8390.1.S1_s_at--97--5811Chr07:23272724..23272748 (25 bp)
GACCCGTATACGTGCGCTCAACTAT
LOC_Os07g38790
Os.8390.1.S1_s_at--799--6871Chr07:23272719..23272743 (25 bp)
GTATACGTGCGCTCAACTATCACAG
LOC_Os07g38790
Os.8390.1.S1_s_at--434--9931Chr07:23272716..23272740 (25 bp)
TACGTGCGCTCAACTATCACAGCAA
LOC_Os07g38790
Os.8390.1.S1_s_at--799--7291Chr07:23272713..23272737 (25 bp)
GTGCGCTCAACTATCACAGCAACTG
LOC_Os07g38790
Os.8390.1.S1_s_at--915--4571Chr07:23272711..23272735 (25 bp)
GCGCTCAACTATCACAGCAACTGCT
LOC_Os07g38790
Os.8390.1.S1_s_at--332--2151Chr07:23272698..23272722 (25 bp)
ACAGCAACTGCTACCATATCATAAC
LOC_Os07g38790
Os.8390.1.S1_s_at--446--5151Chr07:23272695..23272719 (25 bp)
GCAACTGCTACCATATCATAACGAT
LOC_Os07g38790
Os.8390.1.S1_s_at--499--7631Chr07:23272589..23272613 (25 bp)
GGGAGAATACTTCTGCTACTGCTGC
LOC_Os07g38790
Os.8390.1.S1_s_at--1070--8051Chr07:23272588..23272612 (25 bp)
GGAGAATACTTCTGCTACTGCTGCT
LOC_Os07g38790
Os.8390.1.S1_s_at--1147--5951Chr07:23272587..23272611 (25 bp)
GAGAATACTTCTGCTACTGCTGCTG
LOC_Os07g38790
Target Sequence 
AACCGACCCGTATACGTGCGCTCAACTATCACAGCAACTGCTACCATATCATAACGATNTGTTGGNNTTGGNNAAACTAA
AGTGTGNGNTCTGNANTTTTTTTTTTGGTTGGTTTTATTTATTTGTCATTGTGCGANAGGGGAGAATACTTCTGCTACTG
CTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8390.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis