Browse Element(s) Details


Os.12660.1.S1_at

Description gb:AK110940.1
DB_XREF= gi:32996149
TID=Os.12660.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G10, full insert sequence.
FL= gb:AK110940.1 gb:AK101924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3880011/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class
LOC_Os07g38790Os.8390.1.S1_s_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38790OsAffx.16618.1.S1_x_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38800Os.12660.1.S2_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38800Os.12660.1.S1_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38810Os.17201.1.S1_at11/117+23280907..23283254lectin protein kinase, putative, expressed
LOC_Os07g38820OsAffx.28817.1.S1_at11/117+23287584..23290095Lectin receptor-type protein kinase, putative
LOC_Os07g38830Os.27477.1.S1_at11/117+23291668..23295109hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed
LOC_Os07g38850Os.8566.1.S1_at11/117+23300758..23308009UbiA prenyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12660.1.S1_at--616--4911Chr07:23278334..23278358 (25 bp)
GCTTCGGTCCGAAGCCTCGGTCCAA
LOC_Os07g38800
Os.12660.1.S1_at--544--2891Chr07:23278311..23278335 (25 bp)
AAGGTCCTGGACATTGTGCTTCCGC
LOC_Os07g38800
Os.12660.1.S1_at--659--191Chr07:23278276..23278300 (25 bp)
ATTTCTCGTCGCTGCGGTGCTAGCT
LOC_Os07g38800
Os.12660.1.S1_at--109--10271Chr07:23278156..23278180 (25 bp)
TTTGTTCCGCGCGACGGATGGGTTC
LOC_Os07g38800
Os.12660.1.S1_at--1113--7671Chr07:23278082..23278106 (25 bp)
GGGTGCTACCGGAGTCCAATTTGGA
LOC_Os07g38800
Os.12660.1.S1_at--1047--6131Chr07:23278045..23278069 (25 bp)
GAGGGTTTCACATGATTCAAGGCAA
LOC_Os07g38800
Os.12660.1.S1_at--495--10511Chr07:23278030..23278054 (25 bp)
TTCAAGGCAAGGTATAAGGGAGTTC
LOC_Os07g38800
Os.12660.1.S1_at--1149--1091Chr07:23277997..23278021 (25 bp)
AGTGGTGAGCATTGGCCGACTTCGA
LOC_Os07g38800
Os.12660.1.S1_at--466--3791Chr07:23277963..23277987 (25 bp)
CTCGTGCAGTTACTAGGCTATTGCC
LOC_Os07g38800
Os.12660.1.S1_at--865--9891Chr07:23277953..23277977 (25 bp)
TACTAGGCTATTGCCGCCGCAAGAA
LOC_Os07g38800
Os.12660.1.S1_at--403--5271Chr07:23277931..23277955 (25 bp)
GAATGAACTCCTGTTGGTGTACGAT
LOC_Os07g38800
Target Sequence 
GCTTCGGTCCGAAGCCTCGGTCCAAGGTCCTGGACATTGTGCTTCCGCTGGCCACCGCATTTCTCGTCGCTGCGGTGCTA
GCTGCCGTCTTCTTCGTCGTGCGGCGGCGGCGCCGCTTCGCCGAGGTGCGGGAAGATTGGGAGGATGAGTTTGGTCCGCA
CCGGTTCGCATACAAGGATTTGTTCCGCGCGACGGATGGGTTCAAGGATAGAAATTTGCTGGGTGTTGGAGGGTTTGGGA
GAGTTTACAGAGGGGTGCTACCGGAGTCCAATTTGGAGATTGCGGTGAAGAGGGTTTCACATGATTCAAGGCAAGGTATA
AGGGAGTTCGTCGCGGAAGTGGTGAGCATTGGCCGACTTCGACATCGGAATCTCGTGCAGTTACTAGGCTATTGCCGCCG
CAAGAATGAACTCCTGTTGGTGTACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis