Browse Element(s) Details


Os.17201.1.S1_at

Description gb:AK105111.1
DB_XREF= gi:32990320
TID=Os.17201.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F11, full insert sequence.
FL= gb:AK105111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3881011/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class
LOC_Os07g38790Os.8390.1.S1_s_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38790OsAffx.16618.1.S1_x_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38800Os.12660.1.S2_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38800Os.12660.1.S1_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38810Os.17201.1.S1_at11/117+23280907..23283254lectin protein kinase, putative, expressed
LOC_Os07g38820OsAffx.28817.1.S1_at11/117+23287584..23290095Lectin receptor-type protein kinase, putative
LOC_Os07g38830Os.27477.1.S1_at11/117+23291668..23295109hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed
LOC_Os07g38850Os.8566.1.S1_at11/117+23300758..23308009UbiA prenyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17201.1.S1_at--356--4271Chr07:23281404..23281428 (25 bp)
CCTGACGAGGTTTCTCTGGTTCTAA
LOC_Os07g38810
Os.17201.1.S1_at--1139--7871Chr07:23281387..23281411 (25 bp)
GGTTCTAAAACTTGGGCTGCTCTGC
LOC_Os07g38810
Os.17201.1.S1_at--1137--3591Chr07:23281355..23281379 (25 bp)
CATTGCCCAATGCTAGGCCAACAAT
LOC_Os07g38810
Os.17201.1.S1_at--767--6971Chr07:23281315..23281339 (25 bp)
GTACCTCGACGGTGATATGGCCCTA
LOC_Os07g38810
Os.17201.1.S1_at--268--6491Chr07:23281302..23281326 (25 bp)
GATATGGCCCTACCGGATTTGTCAC
LOC_Os07g38810
Os.17201.1.S1_at--1092--6971Chr07:23281273..23281297 (25 bp)
GTACCTAAGCTTCACTTCACTAGAG
LOC_Os07g38810
Os.17201.1.S1_at--164--8031Chr07:23281237..23281261 (25 bp)
GGAGTTCAACCGCAATTCCATTTCA
LOC_Os07g38810
Os.17201.1.S1_at--479--91Chr07:23281223..23281247 (25 bp)
ATTCCATTTCATACATCTCATCAGC
LOC_Os07g38810
Os.17201.1.S1_at--1153--2291Chr07:23281027..23281051 (25 bp)
AAAGGCACACATCAGATACTCCCAA
LOC_Os07g38810
Os.17201.1.S1_at--1004--2031Chr07:23280933..23280957 (25 bp)
ACTATCTTGTTCTCCTTGTACTATG
LOC_Os07g38810
Os.17201.1.S1_at--556--5591Chr07:23280909..23280933 (25 bp)
GAAATCGAGATTCTTCTGTCTTGAT
LOC_Os07g38810
Target Sequence 
CCTGACGAGGTTTCTCTGGTTCTAAAACTTGGGCTGCTCTGCTCGCATCCATTGCCCAATGCTAGGCCAACAATGCGGCA
GGTCGCTCAGTACCTCGACGGTGATATGGCCCTACCGGATTTGTCACCGACGTACCTAAGCTTCACTTCACTAGAGCGGA
TGTACAAGGAGTTCAACCGCAATTCCATTTCATACATCTCATCAGCAAGCATGGGTGCCATTTCTGATATCTCNGGAGGA
AGGTGACAAAGGAAGGGAGCTCGTGATTNTGAGAAGCAGTTGGTGAGGATATGAAAAATCGGGTTTCTCAGTTTATTACT
TCTAGTTTATTTTCTGANTTATAATGGACTGTTTAGGGGGCTAAAAATTCAAAAAAAAAAGGCACACATCAGATACTCCC
AAAGTAGGGCCAAAAATGGTGCTTGTAGCATTGCAGTTAAGAGTATGTTAACGGTGTAACTAGATGCTTTAACTATCTTG
TTCTCCTTGTACTATGAAATCGAGATTCTTCTGTCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis