Browse Element(s) Details


OsAffx.28817.1.S1_at

Description tigr:9635.m03867
TID=OsAffx.28817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3882011/11Lectin receptor-type protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class
LOC_Os07g38790Os.8390.1.S1_s_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38790OsAffx.16618.1.S1_x_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38800Os.12660.1.S2_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38800Os.12660.1.S1_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38810Os.17201.1.S1_at11/117+23280907..23283254lectin protein kinase, putative, expressed
LOC_Os07g38820OsAffx.28817.1.S1_at11/117+23287584..23290095Lectin receptor-type protein kinase, putative
LOC_Os07g38830Os.27477.1.S1_at11/117+23291668..23295109hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed
LOC_Os07g38850Os.8566.1.S1_at11/117+23300758..23308009UbiA prenyltransferase family protein, putative, expressed
LOC_Os07g38860NANA7+23312788..23317460indole-3-acetic acid-amido synthetase GH3.1, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28817.1.S1_at--273--9451Chr07:23288107..23288131 (25 bp)
TCGGCTTGTCAAGGCTACGGGATCA
LOC_Os07g38820
OsAffx.28817.1.S1_at--846--5871Chr07:23288080..23288104 (25 bp)
GAGCCGATGCAAAGACCACATACGT
LOC_Os07g38820
OsAffx.28817.1.S1_at--791--10111Chr07:23288046..23288070 (25 bp)
TATGGGTTACATTGCCCCAGAGCTC
LOC_Os07g38820
OsAffx.28817.1.S1_at--809--931Chr07:23288008..23288032 (25 bp)
AGGCAACACCGTTGACGGACGTGTT
LOC_Os07g38820
OsAffx.28817.1.S1_at--740--2711Chr07:23287889..23287913 (25 bp)
AAGCATTTTCTTAGCGGATCCATCC
LOC_Os07g38820
OsAffx.28817.1.S1_at--930--1611Chr07:23287877..23287901 (25 bp)
AGCGGATCCATCCTTAACGTGGTGG
LOC_Os07g38820
OsAffx.28817.1.S1_at--716--9771Chr07:23287792..23287816 (25 bp)
TAATGTGCTCACATCCATTGCCCAA
LOC_Os07g38820
OsAffx.28817.1.S1_at--132--6251Chr07:23287730..23287754 (25 bp)
GATGGTATGCTTCCAGCACCAGAGC
LOC_Os07g38820
OsAffx.28817.1.S1_at--780--10171Chr07:23287705..23287729 (25 bp)
TATCACCGACGCACATGAGCTATAA
LOC_Os07g38820
OsAffx.28817.1.S1_at--998--6611Chr07:23287652..23287676 (25 bp)
GTTGGTTCACATAGTTTACCCGTGT
LOC_Os07g38820
OsAffx.28817.1.S1_at--402--4251Chr07:23287633..23287657 (25 bp)
CCGTGTGGTCCTCTTTGTTAGATAA
LOC_Os07g38820
Target Sequence 
TCGGCTTGTCAAGGCTACGGGATCATGGAGCCGATGCAAAGACCACATACGTGGTAGGAACTATGGGTTACATTGCCCCA
GAGCTCATGCACACGGGGAAGGCAACACCGTTGACGGACGTGTTCGCGTTCGGTGTGTTCCTCCTCGAGGTCACCTGTGG
ACGAAGGCCGATTGGGGAAAGCGATAGCAACGAGATTCTATTAATAGATTGGGTGCTGAAGCATTTTCTTAGCGGATCCA
TCCTTAACGTGGTGGATCCCCGGCTTGCAGGGAGGTTCAGCTTCGAGGAGGTGAATCTTGTTTTGAAACTAGGACTAATG
TGCTCACATCCATTGCCCAAGGCAAGGCCAAGCATGGACAAAGTTGTGAAGTACCTCGATGGTATGCTTCCAGCACCAGA
GCTATCACCGACGCACATGAGCTATAACATGATGGAGTTGATGCTACAGAATGGGGTTGGTTCACATAGTTTACCCGTGT
GGTCCTCTTTGTTAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis