Browse Element(s) Details


OsAffx.5570.1.S1_at

Description tigr:9635.m03861
TID=OsAffx.5570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3876011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein
LOC_Os07g38720OsAffx.28816.1.S1_at11/117+23233955..23234500hypothetical protein
LOC_Os07g38730Os.9504.1.S1_at11/117+23242103..23245524Tubulin alpha-1 chain, putative, expressed
LOC_Os07g38740Os.57300.1.S1_at10/117+23246386..23246953expressed protein
LOC_Os07g38750OsAffx.16617.1.S1_at11/117+23249643..23250590AP2 domain containing protein
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class
LOC_Os07g38790Os.8390.1.S1_s_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38790OsAffx.16618.1.S1_x_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38800Os.12660.1.S2_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38800Os.12660.1.S1_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38810Os.17201.1.S1_at11/117+23280907..23283254lectin protein kinase, putative, expressed
LOC_Os07g38820OsAffx.28817.1.S1_at11/117+23287584..23290095Lectin receptor-type protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0030089cellular_componentphycobilisome
GO:0008565molecular_functionprotein transporter activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5570.1.S1_at--869--331Chr07:23257131..23257155 (25 bp)
ATACATACCTACCTTTTCTGCTGGA
LOC_Os07g38760
OsAffx.5570.1.S1_at--991--4171Chr07:23256831..23256948 (25 bp)
CCCACTTGTTGGAGAGGCGCTGTCA
LOC_Os07g38760
OsAffx.5570.1.S1_at--1095--8491Chr07:23255711..23255735 (25 bp)
TGGCTTGGTTGCTTGCCTATAAAAG
LOC_Os07g38760
OsAffx.5570.1.S1_at--403--2331Chr07:23255669..23255693 (25 bp)
AAAGTTGTACACGATCAGCTCTCCT
LOC_Os07g38760
OsAffx.5570.1.S1_at--363--6451Chr07:23255657..23255681 (25 bp)
GATCAGCTCTCCTCAATGGTTGAAA
LOC_Os07g38760
OsAffx.5570.1.S1_at--84--7991Chr07:23255551..23255575 (25 bp)
GGATGCAGATATTCTTGGTCCTCAT
LOC_Os07g38760
OsAffx.5570.1.S1_at--1041--7251Chr07:23255534..23255558 (25 bp)
GTCCTCATAGCCAATATCTTCCAAA
LOC_Os07g38760
OsAffx.5570.1.S1_at--723--10771Chr07:23255131..23255155 (25 bp)
TTGAGGCGTTTCCAGCAGACATTGC
LOC_Os07g38760
OsAffx.5570.1.S1_at--40--1411Chr07:23255115..23255139 (25 bp)
AGACATTGCCACCAGATTTTCTTGC
LOC_Os07g38760
OsAffx.5570.1.S1_at--744--6511Chr07:23255101..23255125 (25 bp)
GATTTTCTTGCCTCAACATTTTCCA
LOC_Os07g38760
OsAffx.5570.1.S1_at--384--2511Chr07:23255087..23255111 (25 bp)
AACATTTTCCAGCTTGCAACCACAG
LOC_Os07g38760
Target Sequence 
ATACATACCTACCTTTTCTGCTGGAGGCATCCAATGATGAGAACTCAGATGTTCGGCAGGCTGCTGTCTATGGTGTGGGT
GTATGTGCTGAATTTGGCGGTCATGTTTTCCGCCCACTTGTTGGAGAGGCGCTGTCAAAGTTGAACAATGTTATCACACA
TCCTGAAGCAAAGCATGCAGACAATATAATGGCATATGACAATGCTGTTTCAGCGCTTGGTAAAATATGCCAATTCCATC
GTGATGGTATCGATGCAGCTCAGGTCATTCCTGCCTGGCTTGGTTGCTTGCCTATAAAAGATGACAAGATTGAAGCAAAA
GTTGTACACGATCAGCTCTCCTCAATGGTTGAAAGATCGGATGCAGATATTCTTGGTCCTCATAGCCAATATCTTCCAAA
AATTGTTTCAATTTTTGCGGAGGTTTTATGCAACGGAACAGAGCTTGCTACAGATGAAACAACCAAGCGGATGGTCAATC
TCTTGAGGCGTTTCCAGCAGACATTGCCACCAGATTTTCTTGCCTCAACATTTTCCAGCTTGCAACCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis