Browse Element(s) Details


OsAffx.5583.1.S1_at

Description tigr:9635.m04023
TID=OsAffx.5583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4028011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40260Os.56998.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40260Os.37844.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g40280OsAffx.5583.1.S1_at11/117+24144082..24144708hypothetical protein
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5583.1.S1_at--3--7611Chr07:24144567..24144591 (25 bp)
GGGCAACTGCGGTGTCACCGACGCA
LOC_Os07g40280
OsAffx.5583.1.S1_at--856--1931Chr07:24144488..24144512 (25 bp)
ACGGCGGCGTGGCATCAACAACGCA
LOC_Os07g40280
OsAffx.5583.1.S1_at--803--7951Chr07:24144395..24144419 (25 bp)
GGATCACTAGTGAGGCAGGCGCAAC
LOC_Os07g40280
OsAffx.5583.1.S1_at--169--8891Chr07:24144385..24144409 (25 bp)
TGAGGCAGGCGCAACTGGCTCCCTG
LOC_Os07g40280
OsAffx.5583.1.S1_at--1101--5891Chr07:24144324..24144348 (25 bp)
GAGCTCCCAATTCACAGGCTCGGTG
LOC_Os07g40280
OsAffx.5583.1.S1_at--298--3151Chr07:24144316..24144340 (25 bp)
AATTCACAGGCTCGGTGCCGCTGCC
LOC_Os07g40280
OsAffx.5583.1.S1_at--111--8951Chr07:24144289..24144313 (25 bp)
TGACGTCGAGCTCATCTCTGTCGGC
LOC_Os07g40280
OsAffx.5583.1.S1_at--1050--111Chr07:24144260..24144284 (25 bp)
ATTCTTCCACAATGCCATGTTGTCG
LOC_Os07g40280
OsAffx.5583.1.S1_at--1134--3011Chr07:24144250..24144274 (25 bp)
AATGCCATGTTGTCGCCGCGCAGGT
LOC_Os07g40280
OsAffx.5583.1.S1_at--162--10831Chr07:24144241..24144265 (25 bp)
TTGTCGCCGCGCAGGTGCTGAGCTT
LOC_Os07g40280
OsAffx.5583.1.S1_at--6--1051Chr07:24144229..24144253 (25 bp)
AGGTGCTGAGCTTCCTCTAGTCTTC
LOC_Os07g40280
Target Sequence 
GGGCAACTGCGGTGTCACCGACGCAGCAGGGAGGAGGGCCGGCGGAGACCGTTGGCGGCAAGTGAAGAGGAGCTGAGCGA
CGGCGGCGTGGCATCAACAACGCAACAAGGAGGAGGGGCTGACGGAGAGAAGCCTACCGGCGGCGGCGGTGGCGTCTCTG
ACATGGCGGGGAGGATCACTAGTGAGGCAGGCGCAACTGGCTCCCTGCCACTCCTATCCCCGCTTCCCCGCCAACCGGCT
CTCGAGCTCCCAATTCACAGGCTCGGTGCCGCTGCCGCTGACGTCGAGCTCATCTCTGTCGGCCGCCATTCTTCCACAAT
GCCATGTTGTCGCCGCGCAGGTGCTGAGCTTCCTCTAGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis