Browse Element(s) Details


OsAffx.5646.1.S1_at

Description tigr:9635.m04586
TID=OsAffx.5646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4563011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45610Os.45173.5.S1_x_at4/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.47999.2.A1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.3.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.1.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45620OsAffx.10371.1.S1_at1/117+27231397..27241604retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45620OsAffx.5382.1.S1_at1/117+27231397..27241604retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45620OsAffx.22699.1.S1_x_at1/117+27231397..27241604retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45630OsAffx.5646.1.S1_at11/117+27242513..27245732hypothetical protein
LOC_Os07g45630OsAffx.12184.1.S1_x_at3/117+27242513..27245732hypothetical protein
LOC_Os07g45630OsAffx.18377.1.S1_x_at1/117+27242513..27245732hypothetical protein
LOC_Os07g45640Os.46306.1.S1_x_at2/117+27246623..27247384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45650NANA7+27253704..27259793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45660NANA7+27260109..27263049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45670NANA7+27266475..27268730transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5646.1.S1_at--863--5671Chr07:27243055..27243079 (25 bp)
GACATATCTCAACGGCTAGATGCAT
LOC_Os07g45630
OsAffx.5646.1.S1_at--439--6331Chr07:27243037..27243061 (25 bp)
GATGCATCATTGGATAACCTGGTGA
LOC_Os07g45630
OsAffx.5646.1.S1_at--368--2631Chr07:27243022..27243046 (25 bp)
AACCTGGTGATTGACTGTGGTACAA
LOC_Os07g45630
OsAffx.5646.1.S1_at--367--8571Chr07:27243005..27243029 (25 bp)
TGGTACAATCCGAGCAAGATTTGCC
LOC_Os07g45630
OsAffx.5646.1.S1_at--396--6531Chr07:27242988..27243012 (25 bp)
GATTTGCCGAGATTCAAGCACTCAT
LOC_Os07g45630
OsAffx.5646.1.S1_at--729--9711Chr07:27242975..27242999 (25 bp)
TCAAGCACTCATCCCGAATGATCTG
LOC_Os07g45630
OsAffx.5646.1.S1_at--549--6751Chr07:27242801..27242825 (25 bp)
GTTAAATCAGCTTTCGGTTGGGCCG
LOC_Os07g45630
OsAffx.5646.1.S1_at--549--7831Chr07:27242786..27242810 (25 bp)
GGTTGGGCCGATTCAAACCAGTATA
LOC_Os07g45630
OsAffx.5646.1.S1_at--496--1271Chr07:27242742..27242766 (25 bp)
AGATAGATCTTATAGCTCAGCTGAA
LOC_Os07g45630
OsAffx.5646.1.S1_at--503--8211Chr07:27242717..27242741 (25 bp)
GGAATGCAATGCCAAACTAGCTCTG
LOC_Os07g45630
OsAffx.5646.1.S1_at--719--8831Chr07:27242612..27242636 (25 bp)
TGATTTGACCAAATCTCTCAAGATC
LOC_Os07g45630
Target Sequence 
GACATATCTCAACGGCTAGATGCATCATTGGATAACCTGGTGATTGACTGTGGTACAATCCGAGCAAGATTTGCCGAGAT
TCAAGCACTCATCCCGAATGATCTGGCAAACACCATCTCTCCAGCTGTATATCTTGAGCAACATCAGTTCAAGCTGGAAA
AAGCCAAGCAGAGGATAGCCGATCGACGAGAGCGAAGGGATATTGAAGCCACTATTCAAGCCAATCGGCACACCGTTCAT
GAAGAAAAAGCTAAGTTAAATCAGCTTTCGGTTGGGCCGATTCAAACCAGTATAGATCGGCTTGAGGCTCGAAAGATAGA
TCTTATAGCTCAGCTGAAGGAATGCAATGCCAAACTAGCTCTGGAACAAAAGAAGTTAGCCGATCTCCCAAAGGCTGTCG
AAGAGCAGAAGTCGAGGTTAAAATCGGCTATCAAGAACGTGGCTGATTTGACCAAATCTCTCAAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis