Browse Element(s) Details


OsAffx.5683.1.S1_x_at

Description tigr:9636.m00154
TID=OsAffx.5683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Adenylate kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0255010/11COP9 signalosome complex subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02509NANA8+1032297..1032515NA
LOC_Os08g02520OsAffx.28989.1.S1_s_at11/118+1033244..1033831Auxin-induced protein 10A5, putative, expressed
LOC_Os08g02530NANA8+1039364..1039672Auxin responsive protein
LOC_Os08g02540Os.56279.1.S1_at11/118+1040592..1043634Adenylate kinase family protein, expressed
LOC_Os08g02550Os.33735.1.S1_at11/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_x_at10/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_at4/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5683.1.S1_x_at--463--7391NONE
GTGAGTCTATATTTATGGTTCCATC
NONE
OsAffx.5683.1.S1_x_at--258--7911Chr08:1046491..1046515 (25 bp)
GGTTCCATCATTTCCAAAGTACACA
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--747--7031Chr08:1046509..1046533 (25 bp)
GTACACATCTTCAACTGCTCAAAGG
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--926--6651Chr08:1046964..1046988 (25 bp)
GTTGACCTGTCAACATGCTACAGCA
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--530--3051Chr08:1047240..1047260 (21 bp)
AATCGGACAACAACCTTGGACTTGT
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--963--5171Chr08:1047264..1047288 (25 bp)
GCAAGTGCTCTCCTCAATGTACAAG
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--74--6671Chr08:1047303..1047327 (25 bp)
GTTGACACAGACCTACTTGACTCTT
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--489--9891Chr08:1047316..1047340 (25 bp)
TACTTGACTCTTTCGCTTGAGGATA
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--313--6171Chr08:1047334..1047358 (25 bp)
GAGGATATTGCCAGCTCTGTTCAAC
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--702--2611Chr08:1047363..1047387 (25 bp)
AACCCCGAAGGAGGCTGAGATGCAT
LOC_Os08g02550
OsAffx.5683.1.S1_x_at--1054--691Chr08:1048180..1048204 (25 bp)
ATGAGAACATCTCGTGCGATCCTGC
LOC_Os08g02550
Target Sequence 
GTGAGTCTATATTTATGGTTCCATCATTTCCAAAGTACACATCTTCAACTGCTCAAAGGAACCTCAAAAATCATGCTCAG
GTTTATGTTGACCTGTCAACATGCTACAGCAAAGGTAACTACTCTGAATTAGAGGAGTATATCCAGCTGAATGCTGAGAA
GTTTCAATCGGACAACAACCTTGGACTTGTGAAGCAAGTGCTCTCCTCAATGTACAAGCGAAACATCCAGAGGTTGACAC
AGACCTACTTGACTCTTTCGCTTGAGGATATTGCCAGCTCTGTTCAACTTAAAACCCCGAAGGAGGCTGAGATGCATGTG
CTTAGGATGATTGAAGATGGTGAGATCCATGCAACCATAAACCAGAAGGATGGGATGGTCAGCTTTCATGAAGATCCTGA
GCAATATAAAAGCTGTGAGATGGTTGAGCATATTGACTCGTCTATTCAAAGGTTGATGGCTTTGTCCAAGAAGCTGTCTT
CTATTGATGAGAACATCTCGTGCGATCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5683.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis