Browse Element(s) Details


OsAffx.5684.1.S1_at

Description tigr:9636.m00159
TID=OsAffx.5684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein F21J9.14 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0260011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02550Os.33735.1.S1_at11/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_x_at10/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_at4/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein
LOC_Os08g02610NANA8+1075664..1076215hypothetical protein
LOC_Os08g02620OsAffx.5685.1.S1_at11/118+1077800..1080313hypothetical protein
LOC_Os08g02630Os.51086.1.S1_x_at11/118+1083391..1084388expressed protein
LOC_Os08g02640Os.5499.3.S1_a_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.2.S1_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.4.S1_x_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02650OsAffx.28995.1.S1_at11/118+1092332..1092919hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5684.1.S1_at--1139--5731Chr08:1069221..1069245 (25 bp)
GACTGGCACCGCAAGGTGGACGCCT
LOC_Os08g02600
OsAffx.5684.1.S1_at--557--8231Chr08:1069225..1069249 (25 bp)
GGCACCGCAAGGTGGACGCCTTCGC
LOC_Os08g02600
OsAffx.5684.1.S1_at--532--5691Chr08:1069464..1069488 (25 bp)
GACTTCGAGTTCTCCAACGTGTTCG
LOC_Os08g02600
OsAffx.5684.1.S1_at--744--4691Chr08:1069582..1069606 (25 bp)
GCGGCGACAAGTACTCGGCCAACGA
LOC_Os08g02600
OsAffx.5684.1.S1_at--818--4591Chr08:1069585..1069609 (25 bp)
GCGACAAGTACTCGGCCAACGATCT
LOC_Os08g02600
OsAffx.5684.1.S1_at--1100--2831Chr08:1069590..1069614 (25 bp)
AAGTACTCGGCCAACGATCTGCTCG
LOC_Os08g02600
OsAffx.5684.1.S1_at--273--2011Chr08:1069594..1069618 (25 bp)
ACTCGGCCAACGATCTGCTCGACGT
LOC_Os08g02600
OsAffx.5684.1.S1_at--921--4091Chr08:1069649..1069673 (25 bp)
CGACGTGGTCAGGATCTCCAAGGTC
LOC_Os08g02600
OsAffx.5684.1.S1_at--919--7491Chr08:1069653..1069677 (25 bp)
GTGGTCAGGATCTCCAAGGTCGACG
LOC_Os08g02600
OsAffx.5684.1.S1_at--1011--7111Chr08:1069656..1069680 (25 bp)
GTCAGGATCTCCAAGGTCGACGCCT
LOC_Os08g02600
OsAffx.5684.1.S1_at--312--7951Chr08:1069660..1069684 (25 bp)
GGATCTCCAAGGTCGACGCCTTCGG
LOC_Os08g02600
Target Sequence 
GACTGGCACCGCAAGGTGGACGCCTTCGCCCGGGCCTTCGCCGCGCTCCTCCGCGACGACGGCGGGGGGAAGCTCCTCTC
CAACGCCTCCCGCGCGCTCTGCGTCGGCGCGCGCCTCGGCCAGGAGGTCGCGGCGCTCCGCCTCGTCGGCGTCCGCGACG
CCGTCGGCATCGACCTCGCCCCGGCCCCGCCGCTCGTCGTCAGGGGCGACTTCCACGCGCAGCCGTTCGCCAACGACACC
TTCGACTTCGAGTTCTCCAACGTGTTCGACCACGCGCTCTACCCGGGCCGCTTCGTCGCCGAGATCGAGCGCACGCTCCG
CCCCGGCGGCGTCGCCGTCCTGCACGTCGCGGTGCACCGCCGCGGCGACAAGTACTCGGCCAACGATCTGCTCGACGTCC
ACGGCCTCGTCGGCCTCTTCCGCCGCTCCGACGTGGTCAGGATCTCCAAGGTCGACGCCTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis