Browse Element(s) Details


OsAffx.5696.1.S1_at

Description tigr:9636.m00338
TID=OsAffx.5696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0416011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04100NANA8+1986627..1987348hypothetical protein
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5696.1.S1_at--974--5051Chr08:2011992..2012016 (25 bp)
GCAGCAGATCATCTTGTTGCACCGG
LOC_Os08g04160
OsAffx.5696.1.S1_at--88--1531Chr08:2011994..2012018 (25 bp)
AGCAGATCATCTTGTTGCACCGGAC
LOC_Os08g04160
OsAffx.5696.1.S1_at--828--1271Chr08:2011997..2012021 (25 bp)
AGATCATCTTGTTGCACCGGACGCT
LOC_Os08g04160
OsAffx.5696.1.S1_at--474--9611Chr08:2012000..2012024 (25 bp)
TCATCTTGTTGCACCGGACGCTGCA
LOC_Os08g04160
OsAffx.5696.1.S1_at--468--8811Chr08:2012006..2012030 (25 bp)
TGTTGCACCGGACGCTGCACATGGA
LOC_Os08g04160
OsAffx.5696.1.S1_at--919--10731Chr08:2012008..2012032 (25 bp)
TTGCACCGGACGCTGCACATGGAGT
LOC_Os08g04160
OsAffx.5696.1.S1_at--1099--4751Chr08:2012019..2012043 (25 bp)
GCTGCACATGGAGTTGCTGAAGGAG
LOC_Os08g04160
OsAffx.5696.1.S1_at--224--6051Chr08:2012029..2012053 (25 bp)
GAGTTGCTGAAGGAGGCGGGCGAGA
LOC_Os08g04160
OsAffx.5696.1.S1_at--256--4691Chr08:2012069..2012093 (25 bp)
GCGGCGACGTCCACGCCATCGTGTT
LOC_Os08g04160
OsAffx.5696.1.S1_at--122--3531Chr08:2012085..2012109 (25 bp)
CATCGTGTTCTTCCCCGGCGGGTCG
LOC_Os08g04160
OsAffx.5696.1.S1_at--1091--7791Chr08:2012105..2012129 (25 bp)
GGTCGCGCGCCGAGTACCACACGTT
LOC_Os08g04160
Target Sequence 
GCAGCAGATCATCTTGTTGCACCGGACGCTGCACATGGAGTTGCTGAAGGAGGCGGGCGAGATGGCGGCGGCGTGCGGCG
GCGACGTCCACGCCATCGTGTTCTTCCCCGGCGGGTCGCGCGCCGAGTACCACACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis