Browse Element(s) Details


OsAffx.5697.1.S1_at

Description tigr:9636.m00342
TID=OsAffx.5697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0420011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed
LOC_Os08g04240Os.2227.1.S1_at11/118+2056863..205856533 kDa secretory protein, putative, expressed
LOC_Os08g04250Os.8838.2.S1_at11/118+2060053..206143133 kDa secretory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5697.1.S1_at--682--4571Chr08:2036377..2036401 (25 bp)
GCGCGGATCTGGGACCTCGGTGGTG
LOC_Os08g04200
OsAffx.5697.1.S1_at--140--8631Chr08:2036357..2036381 (25 bp)
TGGTGGTGGATCTAGTGCTCGAAAC
LOC_Os08g04200
OsAffx.5697.1.S1_at--304--7511Chr08:2036352..2036376 (25 bp)
GTGGATCTAGTGCTCGAAACCTCAG
LOC_Os08g04200
OsAffx.5697.1.S1_at--198--5531Chr08:2036337..2036361 (25 bp)
GAAACCTCAGCGACAACGGATCTAG
LOC_Os08g04200
OsAffx.5697.1.S1_at--897--3251Chr08:2036324..2036348 (25 bp)
CAACGGATCTAGTGCTTGGGACATC
LOC_Os08g04200
OsAffx.5697.1.S1_at--215--9531Chr08:2036317..2036341 (25 bp)
TCTAGTGCTTGGGACATCAGTGGCG
LOC_Os08g04200
OsAffx.5697.1.S1_at--588--10611Chr08:2036272..2036296 (25 bp)
TTCGGGAGCTGCAGGACCTCTGGCA
LOC_Os08g04200
OsAffx.5697.1.S1_at--1131--5891Chr08:2036267..2036291 (25 bp)
GAGCTGCAGGACCTCTGGCAATGAT
LOC_Os08g04200
OsAffx.5697.1.S1_at--224--971Chr08:2036260..2036284 (25 bp)
AGGACCTCTGGCAATGATGGCGAAC
LOC_Os08g04200
OsAffx.5697.1.S1_at--876--6211Chr08:2036245..2036269 (25 bp)
GATGGCGAACGATGCTCAGGAGCTC
LOC_Os08g04200
OsAffx.5697.1.S1_at--701--4051Chr08:2036236..2036260 (25 bp)
CGATGCTCAGGAGCTCTGTGACAAC
LOC_Os08g04200
Target Sequence 
GCGCGGATCTGGGACCTCGGTGGTGGTGGATCTAGTGCTCGAAACCTCAGCGACAACGGATCTAGTGCTTGGGACATCAG
TGGCGGCGGAGCTGGTGCTGCCGGCTTCGGGAGCTGCAGGACCTCTGGCAATGATGGCGAACGATGCTCAGGAGCTCTGT
GACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis