Browse Element(s) Details


OsAffx.5710.1.S1_at

Description tigr:9636.m00436
TID=OsAffx.5710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0508011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05050OsAffx.16834.1.S1_at11/118+2586317..2586592hypothetical protein
LOC_Os08g05060OsAffx.11392.2.S1_x_at6/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.3.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.25352.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.20408.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.5.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05070OsAffx.5709.1.S1_at10/118+2600123..2603166hypothetical protein
LOC_Os08g05070Os.46444.1.S1_x_at1/118+2600123..2603166hypothetical protein
LOC_Os08g05080OsAffx.5710.1.S1_at11/118+2604863..2606136hypothetical protein
LOC_Os08g05090OsAffx.5711.1.S1_x_at11/118+2617172..2617546hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5710.1.S1_at--1078--1271Chr08:2605623..2605647 (25 bp)
AGATCATATTCTGCTGCGTCGGTCA
LOC_Os08g05080
OsAffx.5710.1.S1_at--757--4651Chr08:2605608..2605632 (25 bp)
GCGTCGGTCATTGCAATTGATACTC
LOC_Os08g05080
OsAffx.5710.1.S1_at--292--1011Chr08:2605580..2605604 (25 bp)
AGGATTTGCTCCTTCTTGAAGCAGA
LOC_Os08g05080
OsAffx.5710.1.S1_at--926--8091Chr08:2605552..2605576 (25 bp)
GGACCAGCTACGCTTGCATGATGTG
LOC_Os08g05080
OsAffx.5710.1.S1_at--755--6291Chr08:2605524..2605548 (25 bp)
GATGATCAGTTTGTTGCATGCCCAT
LOC_Os08g05080
OsAffx.5710.1.S1_at--326--8791Chr08:2605489..2605513 (25 bp)
TGTTATCACAATGTCTCTTTCGCCT
LOC_Os08g05080
OsAffx.5710.1.S1_at--1059--5912Chr08:2605452..2605476 (25 bp)
GAGCTTGTCCTCATGCATGGTTGGC
LOC_Os08g05080
OsAffx.5710.1.S1_at--687--2091Chr08:2605334..2605358 (25 bp)
ACATGCGGCTTATGGAGGTTCCTCA
LOC_Os08g05080
OsAffx.5710.1.S1_at--665--1011Chr08:2605319..2605343 (25 bp)
AGGTTCCTCAGTTCGATTGCTCTGA
LOC_Os08g05080
OsAffx.5710.1.S1_at--866--3171Chr08:2605257..2605281 (25 bp)
AATTGTGTTGTTGTCTATCATGCGA
LOC_Os08g05080
OsAffx.5710.1.S1_at--522--1391Chr08:2605185..2605209 (25 bp)
AGACGCTTCGTAACCACTGCATTGA
LOC_Os08g05080
Target Sequence 
AGATCATATTCTGCTGCGTCGGTCATTGCAATTGATACTCAGAAGGATTTGCTCCTTCTTGAAGCAGAAGTGGACCAGCT
ACGCTTGCATGATGTGGATGATGATCAGTTTGTTGCATGCCCATTTGATCACCCTGTTATCACAATGTCTCTTTCGCCTC
CTGCGAAAGATGAGCTTGTCCTCATGCATGGTTGGCCGCCACACCGAGTGAACTCATCTGTCTGGGGCAATGCAAGTCAT
AACAATAGAACTTATGATGTTCTGACAAGATCGAACGTCAAAGGATATGACATGCGGCTTATGGAGGTTCCTCAGTTCGA
TTGCTCTGATGGGTTTTCTGGAAGCCCAATACTGAATGGAGATTCTAATTGTGTTGTTGTCTATCATGCGATAATCAAAC
AAACCAAGTTTGGATACTGTATTAGTTTGGATGATGTCAGACGCTTCGTAACCACTGCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis