Browse Element(s) Details


OsAffx.5720.1.S1_at

Description tigr:9636.m00509
TID=OsAffx.5720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=O-methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0579011/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05750OsAffx.29053.1.S1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05750Os.17179.1.A1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05770NANA8+3082700..3083407hypothetical protein
LOC_Os08g05780Os.9594.1.S1_at11/118+3087435..3088496expressed protein
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed
LOC_Os08g05810Os.54300.1.S1_at5/118+3107628..3110952DEAD/DEAH box helicase, putative
LOC_Os08g05820OsAffx.29054.1.S1_at11/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05820Os.23535.1.A1_at9/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5720.1.S1_at--1153--8993Chr12:8650300..8650323 (24 bp)
TGAAGGCATTGTCTGGAGTTCACAG
NONE
OsAffx.5720.1.S1_at--569--8033Chr08:3098753..3098777 (25 bp)
GGAGTTCACAGAATTTCCCTAGGTG
LOC_Os08g05790
OsAffx.5720.1.S1_at--1020--5513Chr08:3098777..3098801 (25 bp)
GAAAACCTATGGTCTGATCTTAGTT
LOC_Os08g05790
OsAffx.5720.1.S1_at--823--673Chr12:8650371..8650720 (25 bp)
ATGACAATGATGACGCGTGCACGCG
NONE
OsAffx.5720.1.S1_at--735--1833Chr08:3098831..3098855 (25 bp)
ACGCGTCATTTCCTCATTGGAGGCA
LOC_Os08g05790
OsAffx.5720.1.S1_at--786--2311Chr08:3098863..3098887 (25 bp)
AAAGGGAGTCCGTATGATAGTCTAA
LOC_Os08g05790
OsAffx.5720.1.S1_at--4--151Chr08:3098918..3098942 (25 bp)
ATTACTTGTGGTTGTAGTTCGCTGT
LOC_Os08g05790
OsAffx.5720.1.S1_at--554--1231Chr08:3098933..3098957 (25 bp)
AGTTCGCTGTGGCACGGTTGTAATA
LOC_Os08g05790
OsAffx.5720.1.S1_at--522--1931Chr08:3098946..3098970 (25 bp)
ACGGTTGTAATAGTTGTGTCGCTTT
LOC_Os08g05790
OsAffx.5720.1.S1_at--833--6494Chr12:8650533..8650557 (25 bp)
GATAGGCTGTGTGCATCCTAGCTAT
NONE
OsAffx.5720.1.S1_at--1114--10413Chr12:8650577..8650601 (25 bp)
TTAGAAAAATTGTATCCTCTCGATG
NONE
Target Sequence 
TGAAGGCATTGTCTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATCTTAGTTGATTGGAACATGACAAT
GATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGTTTTAAAGGGAGTCCGTATGATAGTCTAAGTGTTGTTTTG
GTGGAGATAAGAGATGAAGATTACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTT
TTCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTTAGAAAAATTGTATCCTCTC
GATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis