Browse Element(s) Details


OsAffx.5731.1.S1_at

Description tigr:9636.m00644
TID=OsAffx.5731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0709010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07040OsAffx.16867.1.S1_at11/118+3934777..3938452expressed protein
LOC_Os08g07050NANA8+3939587..3940141hypothetical protein
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07090OsAffx.5731.1.S1_at10/118+3960134..3963366hypothetical protein
LOC_Os08g07090OsAffx.22759.2.S1_at1/118+3960134..3963366hypothetical protein
LOC_Os08g07100Os.26849.1.S1_at9/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07100Os.26820.1.A1_s_at2/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07109NANA8+3976967..3978980NA
LOC_Os08g07120OsAffx.29072.1.S1_at10/118+3979323..3982448Terpene synthase family, metal binding domain containing protein
LOC_Os08g07130NANA8+3985008..3991163transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5731.1.S1_at--34--8011NONE
GGAGGAGTTCTCAACGCAATAGCAC
NONE
OsAffx.5731.1.S1_at--366--5191Chr08:3961241..3961265 (25 bp)
GCAATAGCACGTTGGAAACCTGAGC
LOC_Os08g07090
OsAffx.5731.1.S1_at--514--2631Chr08:3961225..3961249 (25 bp)
AACCTGAGCTTATACGTATTTCGTC
LOC_Os08g07090
OsAffx.5731.1.S1_at--1043--10191Chr08:3961209..3961233 (25 bp)
TATTTCGTCTTCCTACTTGGTACCT
LOC_Os08g07090
OsAffx.5731.1.S1_at--605--1111Chr08:3961181..3961205 (25 bp)
AGTGTTGTCTCTATCATCTACTACC
LOC_Os08g07090
OsAffx.5731.1.S1_at--93--671Chr08:3960656..3960680 (25 bp)
ATGAAGGCAGCCTTCTCAGCCTCTA
LOC_Os08g07090
OsAffx.5731.1.S1_at--500--9891Chr08:3960633..3960657 (25 bp)
TACTCTCCTGCTAGGGACCAACAGG
LOC_Os08g07090
OsAffx.5731.1.S1_at--449--9151Chr08:3960352..3960376 (25 bp)
TGCGACTCCCGGGTGCGTGGCTCAA
LOC_Os08g07090
OsAffx.5731.1.S1_at--373--10051Chr08:3960264..3960288 (25 bp)
TAGTTGGGCACCTTGAATGCGCCAT
LOC_Os08g07090
OsAffx.5731.1.S1_at--537--5271Chr08:3960250..3960274 (25 bp)
GAATGCGCCATCAATGCCGTTGGTG
LOC_Os08g07090
OsAffx.5731.1.S1_at--536--831Chr08:3960194..3960218 (25 bp)
AGGCCTAGGGAATGGGACTGACTTT
LOC_Os08g07090
Target Sequence 
GGAGGAGTTCTCAACGCAATAGCACGTTGGAAACCTGAGCTTATACGTATTTCGTCTTCCTACTTGGTACCTAAAAGTGT
TGTCTCTATCATCTACTACCTCCGTTTCACAATAAGTACAGGAAATTATGAAGGCAGCCTTCTCAGCCTCTACTCTCCTG
CTAGGGACCAACAGGGATCCTGCGACTCCCGGGTGCGTGGCTCAAGGGCAAGGCGGGAGACTGGGGCTCCTCGACCCTTT
GCTCTGGCACCGCCGCTTGTGTCAGGGGTAGTTGGGCACCTTGAATGCGCCATCAATGCCGTTGGTGTCACGCGCCCTGG
ATGCCATCATGTTGTTGGAGGCCTAGGGAATGGGACTGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis