Browse Element(s) Details


OsAffx.5734.1.S1_at

Description tigr:9636.m00661
TID=OsAffx.5734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0726011/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07220NANA8+4017330..4022355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07230NANA8+4023033..4025974retrotransposon protein, putative, unclassified
LOC_Os08g07240OsAffx.29075.1.S1_at11/118+4030933..4032737hypothetical protein
LOC_Os08g07250OsAffx.16871.1.S1_at11/118+4043663..4044171hypothetical protein
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5734.1.S1_at--550--691Chr08:4047420..4047444 (25 bp)
ATGAGCCTCGATCGAGCTCTTGCAG
LOC_Os08g07260
OsAffx.5734.1.S1_at--823--10731Chr08:4047439..4047463 (25 bp)
TTGCAGCGGGTTTCAGCGCGTCCAT
LOC_Os08g07260
OsAffx.5734.1.S1_at--666--4331Chr08:4047460..4047484 (25 bp)
CCATGGCAGCCGACAGCAAGTTCTT
LOC_Os08g07260
OsAffx.5734.1.S1_at--123--6491Chr08:4047491..4047515 (25 bp)
GATAGCCATCCGCAGGCACGTTGAA
LOC_Os08g07260
OsAffx.5734.1.S1_at--161--6751Chr08:4047518..4047542 (25 bp)
GTTCATGAATGTTAGCTCGCTGGTC
LOC_Os08g07260
OsAffx.5734.1.S1_at--953--6111Chr08:4047572..4047596 (25 bp)
GAGGGCCATTGTCAAGGCCTTCCCA
LOC_Os08g07260
OsAffx.5734.1.S1_at--551--2071Chr08:4047598..4047622 (25 bp)
ACATCAAGTGCCTGGTTCTAGACCT
LOC_Os08g07260
OsAffx.5734.1.S1_at--269--10031Chr08:4047616..4047640 (25 bp)
TAGACCTACCACATGTTGTCCGTGG
LOC_Os08g07260
OsAffx.5734.1.S1_at--394--171Chr08:4047688..4047712 (25 bp)
ATTTTGTTCCACCAGCTAATGTTGT
LOC_Os08g07260
OsAffx.5734.1.S1_at--700--6631Chr08:4047708..4048007 (25 bp)
GTTGTGCTACTCAAACTTGTATTAC
LOC_Os08g07260
OsAffx.5734.1.S1_at--983--5391Chr08:4048133..4048157 (25 bp)
GAAGCTCAACTTTTCTTGGATCTAT
LOC_Os08g07260
Target Sequence 
ATGAGCCTCGATCGAGCTCTTGCAGCGGGTTTCAGCGCGTCCATGGCAGCCGACAGCAAGTTCTTGGCGGAGATAGCCAT
CCGCAGGCACGTTGAAGCGTTCATGAATGTTAGCTCGCTGGTCGATGTCGGTGGCGGGGATGGCTCGATGGCGAGGGCCA
TTGTCAAGGCCTTCCCACACATCAAGTGCCTGGTTCTAGACCTACCACATGTTGTCCGTGGCATTCCCGCTGATGGTTTT
GTTGAGTATGTTGCGGGTGATATGATGGATTTTGTTCCACCAGCTAATGTTGTGCTACTCAAACTTGTATTACATGATTG
GAGTGATGAGGATTGTGTAAGAATCCTGTCAAGATGCAGAGAGGCTATTTCAAATAGGGAAGGAGGCAAAGTGATAATTA
TAGACACAGTGATTGGATCACAATCTCAACAGATATATGAAGCTCAACTTTTCTTGGATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis