Browse Element(s) Details


OsAffx.5770.1.S1_at

Description tigr:9636.m00956
TID=OsAffx.5770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0998011/11hypothetical protein
LOC_Os06g441101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein
LOC_Os08g09970OsAffx.16930.1.S1_at9/118+5755324..5755828hypothetical protein
LOC_Os08g09980OsAffx.5770.1.S1_at11/118+5764586..5765376hypothetical protein
LOC_Os08g09990OsAffx.16931.1.S1_at11/118+5767689..5770093hypothetical protein
LOC_Os08g09990OsAffx.19106.1.S1_at1/118+5767689..5770093hypothetical protein
LOC_Os08g10000OsAffx.29127.1.S1_at11/118+5774462..5774857hypothetical protein
LOC_Os08g10010Os.5295.1.S1_at11/118+5781253..5782786Acyl-desaturase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5770.1.S1_at--344--2571Chr08:5764687..5764711 (25 bp)
AACTGTCCTTGTCGCTGAATTTTTC
LOC_Os08g09980
OsAffx.5770.1.S1_at--758--3211Chr08:5764711..5764735 (25 bp)
CAAGGTCTTCGAACTGCTTTGGACA
LOC_Os08g09980
OsAffx.5770.1.S1_at--862--1112Chr08:5765064..5765088 (25 bp)
AGTGACAAGGCTAGGCATCCCTCAG
LOC_Os08g09980
OsAffx.5770.1.S1_at--344--551Chr08:5765080..5765104 (25 bp)
ATCCCTCAGCAATGGCCACAGAATT
LOC_Os08g09980
OsAffx.5770.1.S1_at--496--1471Chr08:5765099..5765123 (25 bp)
AGAATTGGCCCCTGACGGCAATCCT
LOC_Os08g09980
OsAffx.5770.1.S1_at--918--7731Chr08:5765132..5765156 (25 bp)
GGTGGGTCCAAACAGTTCAGGCAAC
LOC_Os08g09980
OsAffx.5770.1.S1_at--778--111Chr08:5765188..5765212 (25 bp)
ATTCTAATCCTACTCTCCTGGGAGA
LOC_Os08g09980
OsAffx.5770.1.S1_at--235--10291Chr08:5765238..5765262 (25 bp)
TTTCGGAAACCTAGAGACTCCGCCG
LOC_Os08g09980
OsAffx.5770.1.S1_at--236--3811Chr08:5765255..5765279 (25 bp)
CTCCGCCGCACAGAATCATTGATAA
LOC_Os08g09980
OsAffx.5770.1.S1_at--1147--1111Chr08:5765280..5765304 (25 bp)
AGTGACCGACGAGATCTGGCTATGG
LOC_Os08g09980
OsAffx.5770.1.S1_at--63--1091Chr08:5765321..5765345 (25 bp)
AGGGCATCCAGTGCCTGACGGCGAA
LOC_Os08g09980
Target Sequence 
AACTGTCCTTGTCGCTGAATTTTTCAAGGTCTTCGAACTGCTTTGGACATCAGTGACAAGGCTAGGCATCCCTCAGCAAT
GGCCACAGAATTGGCCCCTGACGGCAATCCTGGAGGACTGGTGGGTCCAAACAGTTCAGGCAACGGCTAAGGAGAAAAGG
AAGGGGGTCAAATCGATTCTAATCCTACTCTCCTGGGAGATTTGGAAGGAGAGAAACAGCAGGGTTTTCGGAAACCTAGA
GACTCCGCCGCACAGAATCATTGATAAAGTGACCGACGAGATCTGGCTATGGTGCGCGGGAGGGGCAAAGGGCATCCAGT
GCCTGACGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis