Browse Element(s) Details


OsAffx.5801.1.S1_at

Description tigr:9636.m01305
TID=OsAffx.5801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1323011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13190Os.49232.1.S1_x_at2/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190Os.45982.1.A1_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190OsAffx.18435.1.S1_x_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13200NANA8+7839612..7840385hypothetical protein
LOC_Os08g13210OsAffx.24284.5.A1_at1/118+7848746..7851377hypothetical protein
LOC_Os08g13219OsAffx.26691.1.S1_at4/118+7854708..7855378hypothetical protein
LOC_Os08g13230OsAffx.5801.1.S1_at11/118+7857946..7858422hypothetical protein
LOC_Os08g13240Os.40360.1.S1_x_at1/118+7862515..7863765hypothetical protein
LOC_Os08g13250OsAffx.29176.1.S1_at11/118+7872886..7875334BTB/POZ domain containing protein
LOC_Os08g13259NANA8+7883340..7884451NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5801.1.S1_at--566--8851Chr08:7858367..7858391 (25 bp)
TGATGCCCGCGGCTAAAGCTTTCGC
LOC_Os08g13230
OsAffx.5801.1.S1_at--1035--5371Chr08:7858312..7858336 (25 bp)
GAAGAAGCCTCCTGTAGTGAGCAAG
LOC_Os08g13230
OsAffx.5801.1.S1_at--969--2731Chr08:7858290..7858314 (25 bp)
AAGAAGGTGCCGATGCCGCAGGTCT
LOC_Os08g13230
OsAffx.5801.1.S1_at--390--9371Chr08:7858262..7858286 (25 bp)
TCGACTACATCCTCTCATGGACGAG
LOC_Os08g13230
OsAffx.5801.1.S1_at--801--3951Chr08:7858187..7858211 (25 bp)
CGGAGCATCGCAACCAGGACGACGA
LOC_Os08g13230
OsAffx.5801.1.S1_at--515--10611Chr08:7858146..7858170 (25 bp)
TTCGAGGCCAAGGTCCGTGCGCAGC
LOC_Os08g13230
OsAffx.5801.1.S1_at--841--2911Chr08:7858092..7858116 (25 bp)
AAGGACGATGAGTTCGCCGTGTTCC
LOC_Os08g13230
OsAffx.5801.1.S1_at--49--8811Chr08:7858073..7858097 (25 bp)
TGTTCCAGGCCAAGGTCCGTGACGA
LOC_Os08g13230
OsAffx.5801.1.S1_at--42--4771Chr08:7858034..7858058 (25 bp)
GCTGCTACATGGTCGATGGCACCTA
LOC_Os08g13230
OsAffx.5801.1.S1_at--49--1751Chr08:7858014..7858038 (25 bp)
ACCTACTTCGCCGATCTGGAAGCAG
LOC_Os08g13230
OsAffx.5801.1.S1_at--822--911Chr08:7857986..7858010 (25 bp)
AGGCTCTCTCCAATGAACTATTTGC
LOC_Os08g13230
Target Sequence 
TGATGCCCGCGGCTAAAGCTTTCGCCGGGGCCGGAGGAGGTGGAGACAACGTCGAGAAGAAGCCTCCTGTAGTGAGCAAG
AAGGTGCCGATGCCGCAGGTCTTGCTCGACTACATCCTCTCATGGACGAGGATGGGACCATGGCCGAGCTCCGACGACCA
CTCGGAGTTCCTCCTCTCGCCGGAGCATCGCAACCAGGACGACGACGATGGCTTCGCCGCGTTCGAGGCCAAGGTCCGTG
CGCAGCGCGAGGAGCTGTCCGCCTTCCTCGACAAGAAGGACGATGAGTTCGCCGTGTTCCAGGCCAAGGTCCGTGACGAG
GTCGACGAGAACGGCTGCTACATGGTCGATGGCACCTACTTCGCCGATCTGGAAGCAGCCCAGGCTCTCTCCAATGAACT
ATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis