Browse Element(s) Details


OsAffx.5817.1.S1_at

Description tigr:9636.m01460
TID=OsAffx.5817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1460011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14570Os.27682.1.S1_at10/118+8753744..8758865NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os08g14580Os.6287.1.S1_at10/118+8761383..8765231HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g14590OsAffx.5816.1.S1_at11/118+8767983..8768448hypothetical protein
LOC_Os08g14600OsAffx.5817.1.S1_at11/118+8775521..8776513expressed protein
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14620Os.19942.1.S1_at11/118+8789340..8791488expressed protein
LOC_Os08g14630NANA8+8794611..8795461hypothetical protein
LOC_Os08g14640Os.22829.1.S1_at11/118+8796477..8800537expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5817.1.S1_at--829--1851Chr08:8775661..8775685 (25 bp)
ACGACTTCGAGTTCGCGCCGCTGCT
LOC_Os08g14600
OsAffx.5817.1.S1_at--1011--4691Chr08:8775706..8775730 (25 bp)
GCGGCGAGTGTCGTCGTCCAAGAAC
LOC_Os08g14600
OsAffx.5817.1.S1_at--842--4611Chr08:8775709..8775733 (25 bp)
GCGAGTGTCGTCGTCCAAGAACCTC
LOC_Os08g14600
OsAffx.5817.1.S1_at--430--9951Chr08:8775797..8775821 (25 bp)
TACGCCGGTGAAACAGCGCACGCCT
LOC_Os08g14600
OsAffx.5817.1.S1_at--403--6231Chr08:8775849..8775873 (25 bp)
GAGGCCAAGTCATCGGCTGCTCCGG
LOC_Os08g14600
OsAffx.5817.1.S1_at--313--4171Chr08:8776054..8776078 (25 bp)
CGCCGTGGAGGCTGATACGGTCACT
LOC_Os08g14600
OsAffx.5817.1.S1_at--476--8831Chr08:8776066..8776090 (25 bp)
TGATACGGTCACTGAGCTGCAAGGG
LOC_Os08g14600
OsAffx.5817.1.S1_at--448--8351Chr08:8776118..8776417 (25 bp)
GGCGGCGCCGTATCATAATTTATTA
LOC_Os08g14600
OsAffx.5817.1.S1_at--13--971Chr08:8776417..8776441 (25 bp)
AGGACTGATCCTACTGAGAAAACAT
LOC_Os08g14600
OsAffx.5817.1.S1_at--502--2511Chr08:8776437..8776461 (25 bp)
AACATAACGGCATCCTTGAGCTCAC
LOC_Os08g14600
OsAffx.5817.1.S1_at--1056--4311Chr08:8776450..8776474 (25 bp)
CCTTGAGCTCACCAACATAATGGAA
LOC_Os08g14600
Target Sequence 
ACGACTTCGAGTTCGCGCCGCTGCTGCCCCAGCGCCGGCGGCTGCGCGGCGAGTGTCGTCGTCCAAGAACCTCCGCCGCC
GCCGTCGCCGCATGCCGCGGCACGGCCGTCGTCCACGCCGTGCTCACGCAGCCGCCTACGCCGGTGAAACAGCGCACGCC
TCGCCGTCGCCAGGCGGCGGCGGCGGCGGAGGCCAAGTCATCGGCTGCTCCGGCTTCGGCGGCGGCGGCGGCGGCGCGGA
GGGTGCGGTGGCACGAGATGGCGTTCGGGTCGGTGCGCGTGCCGGCGGCCATGGACATGGGCGAGATCAGGAGGCGGCTA
CACGCGCGGCGCCGGAGGCTAGCCTACGGCGACGGCGAGGCCGGCGACGCGGCCGCGGCGGCCGCCGGGTGGGCGCCGTG
GAGGCTGATACGGTCACTGAGCTGCAAGGGCATCGAGGCCGTCGCCGTGGCTGCCGCGGCGGCGCCGTATCATAATTTAT
TAGGACTGATCCTACTGAGAAAACATAACGGCATCCTTGAGCTCACCAACATAATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis