Browse Element(s) Details


Os.27682.1.S1_at

Description gb:AK068915.1
DB_XREF= gi:32978939
TID=Os.27682.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001C12, full insert sequence.
FL= gb:AK099083.1 gb:AK068915.1 gb:AK101320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1457010/11NADPH-cytochrome P450 reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14530NANA8+8725622..8732365retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g14540Os.46314.2.S1_x_at3/118+8736337..8738792retrotransposon protein, putative, unclassified
LOC_Os08g14540Os.47114.1.S1_x_at2/118+8736337..8738792retrotransposon protein, putative, unclassified
LOC_Os08g14540Os.10731.2.A1_at2/118+8736337..8738792retrotransposon protein, putative, unclassified
LOC_Os08g14550OsAffx.22492.1.S1_at1/118+8739890..8745361retrotransposon protein, putative, unclassified
LOC_Os08g14550OsAffx.22492.1.S1_x_at1/118+8739890..8745361retrotransposon protein, putative, unclassified
LOC_Os08g14560Os.31312.5.S1_x_at4/118+8746413..8749600retrotransposon protein, putative, unclassified
LOC_Os08g14560Os.31312.2.S1_x_at2/118+8746413..8749600retrotransposon protein, putative, unclassified
LOC_Os08g14570Os.27682.1.S1_at10/118+8753744..8758865NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os08g14580Os.6287.1.S1_at10/118+8761383..8765231HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g14590OsAffx.5816.1.S1_at11/118+8767983..8768448hypothetical protein
LOC_Os08g14600OsAffx.5817.1.S1_at11/118+8775521..8776513expressed protein
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009698biological_processphenylpropanoid metabolism
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0003958molecular_functionNADPH-hemoprotein reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27682.1.S1_at--731--2691NONE
AAGCTTCCGAAATCTGGGACATGAT
NONE
Os.27682.1.S1_at--153--6351Chr08:8758222..8758246 (25 bp)
GATCTCCCAGGGTGGTTACATTTAC
LOC_Os08g14570
Os.27682.1.S1_at--979--2071Chr08:8758239..8758263 (25 bp)
ACATTTACGTCTGTGGTGATGCCAA
LOC_Os08g14570
Os.27682.1.S1_at--816--3291Chr08:8758261..8758285 (25 bp)
CAAAGGCATGGCCAGAGATGTACAT
LOC_Os08g14570
Os.27682.1.S1_at--806--10011Chr08:8758285..8758309 (25 bp)
TAGAGTTCTCCACACCATTGTACAG
LOC_Os08g14570
Os.27682.1.S1_at--998--5491Chr08:8758414..8758436 (23 bp)
GAACAGGGATCACTTGACAGCTCTA
LOC_Os08g14570
Os.27682.1.S1_at--982--8891Chr08:8758441..8758465 (25 bp)
TGAGAGCTTTGTGAAGAGCCTCCAA
LOC_Os08g14570
Os.27682.1.S1_at--943--10351Chr08:8758506..8758530 (25 bp)
TTTTCAGCACACCAAAAACGCCTGT
LOC_Os08g14570
Os.27682.1.S1_at--377--131Chr08:8758531..8758555 (25 bp)
ATTCATGAGGCACAACATTCGTTCA
LOC_Os08g14570
Os.27682.1.S1_at--788--9551Chr08:8758683..8758707 (25 bp)
TCTTTTATCTTTCTTGAGTTCCATA
LOC_Os08g14570
Os.27682.1.S1_at--699--6571Chr08:8758700..8758724 (25 bp)
GTTCCATAAGAGGTTTTTTCGACTG
LOC_Os08g14570
Target Sequence 
AAGCTTCCGAAATCTGGGACATGATCTCCCAGGGTGGTTACATTTACGTCTGTGGTGATGCCAAAGGCATGGCCAGAGAT
GTACATAGAGTTCTCCACACCATTGTACAGGAACAGGGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCT
CCAAACGGAGGGTAGGTATCTGAGAGATGTGTGGTAAGAGGTGATTTTCAGCACACCAAAAACGCCTGTATTCATGAGGC
ACAACATTCGTTCATATATAGTAGTACAGAAGTTCCTTCAAGGAGCAATATTGCTGGAAGAATATTGACACATGACCAAG
ATGAAATGCTTTTAGTAGCTCAGCATTTTTTTTTCTTCTCTCTTTTCTTTTTTTTTCCCTTTCTTTTATCTTTCTTGAGT
TCCATAAGAGGTTTTTTCGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis