Browse Element(s) Details


Os.6287.1.S1_at

Description gb:AB110183.1
DB_XREF= gi:32352163
TID=Os.6287.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 14FPB010
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 14FPB010.
FL= gb:AB110183.1 gb:AK101443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1458010/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14540Os.46314.2.S1_x_at3/118+8736337..8738792retrotransposon protein, putative, unclassified
LOC_Os08g14540Os.47114.1.S1_x_at2/118+8736337..8738792retrotransposon protein, putative, unclassified
LOC_Os08g14540Os.10731.2.A1_at2/118+8736337..8738792retrotransposon protein, putative, unclassified
LOC_Os08g14550OsAffx.22492.1.S1_at1/118+8739890..8745361retrotransposon protein, putative, unclassified
LOC_Os08g14550OsAffx.22492.1.S1_x_at1/118+8739890..8745361retrotransposon protein, putative, unclassified
LOC_Os08g14560Os.31312.5.S1_x_at4/118+8746413..8749600retrotransposon protein, putative, unclassified
LOC_Os08g14560Os.31312.2.S1_x_at2/118+8746413..8749600retrotransposon protein, putative, unclassified
LOC_Os08g14570Os.27682.1.S1_at10/118+8753744..8758865NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os08g14580Os.6287.1.S1_at10/118+8761383..8765231HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g14590OsAffx.5816.1.S1_at11/118+8767983..8768448hypothetical protein
LOC_Os08g14600OsAffx.5817.1.S1_at11/118+8775521..8776513expressed protein
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14620Os.19942.1.S1_at11/118+8789340..8791488expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6287.1.S1_at--533--10751Chr08:8762008..8762032 (25 bp)
TTGAAGACGCACCTTCTGGTGTTGC
LOC_Os08g14580
Os.6287.1.S1_at--454--751NONE
ATGTATGCGGTGATGGTCCCAGATT
NONE
Os.6287.1.S1_at--786--10651Chr08:8761817..8761841 (25 bp)
TTCCCTGCTGGATTTCAAACCTGGT
LOC_Os08g14580
Os.6287.1.S1_at--791--8291Chr08:8761786..8761810 (25 bp)
GGCTTGCCACCTTTTACAGATTAGA
LOC_Os08g14580
Os.6287.1.S1_at--745--5972Chr08:8761670..8761694 (25 bp)
GAGAAAAACTCTGGCCTTCATAGGC
LOC_Os08g14580
Os.6287.1.S1_at--215--10211Chr08:8761632..8761656 (25 bp)
TATTTCTTGATCAGCCCATTCGTAA
LOC_Os08g14580
Os.6287.1.S1_at--988--1331Chr08:8761602..8761626 (25 bp)
AGAGAAATTTATCGCCCTACTTATA
LOC_Os08g14580
Os.6287.1.S1_at--1052--111Chr08:8761507..8761531 (25 bp)
ATTCTTGCTGCCTACTATTTTGTGG
LOC_Os08g14580
Os.6287.1.S1_at--507--7531Chr08:8761486..8761510 (25 bp)
GTGGCAGCGAACTACGACATACTTC
LOC_Os08g14580
Os.6287.1.S1_at--1045--9231Chr08:8761443..8761467 (25 bp)
TCCATAGCTTGGTGTGTTCTTGAAC
LOC_Os08g14580
Os.6287.1.S1_at--686--10392Chr11:2884772..2884791 (20 bp)
TTTTGTGCTTTGCTTTCCAGGGAAA
NONE
Target Sequence 
TTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGAT
GTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTT
TACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAAT
GGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATT
CGTAAAATTTAGAGAAATTTATCGCCCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGG
CTTAGTGACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATA
AAAAGAATCTCCATAGCTTGGTGTGTTCTTGAACCTTTTTTGTGCTTTGCTTTCCAGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis