Browse Element(s) Details


OsAffx.5828.2.S1_at

Description tigr:9636.m01563
TID=OsAffx.5828.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1559011/11hypothetical protein
LOC_Os05g333903/11Cation-transporting ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15550OsAffx.17012.1.S1_at11/118+9452302..9453139hypothetical protein
LOC_Os08g15550OsAffx.18229.1.S1_x_at1/118+9452302..9453139hypothetical protein
LOC_Os08g15560OsAffx.29219.1.S1_at11/118+9454638..9455462hypothetical protein
LOC_Os08g15570NANA8+9457660..9463755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15580OsAffx.21897.5.S1_x_at4/118+9464072..9467011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15590Os.46319.1.S1_s_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.2.S1_x_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.2.S1_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.1.S1_at4/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.3.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.52575.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.9743.2.S1_x_at2/118+9469276..9474723hypothetical protein
LOC_Os08g15600Os.26733.3.S1_x_at1/118+9475529..9475939Stomatin-like protein 2, putative
LOC_Os08g15610OsAffx.29220.1.S1_at11/118+9478018..9478773hypothetical protein
LOC_Os08g15620Os.55229.1.S1_s_at1/118+9478887..9479945hypothetical protein
LOC_Os08g15630NANA8+9486898..9487758hypothetical protein
LOC_Os08g15639NANA8+9494397..9495652NA

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Gene Ontology Classification
GO idTypeName
GO:0019829molecular_functioncation-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5828.2.S1_at--949--1693Chr12:26983133..26983157 (25 bp)
AGCCAGCCGTGGGTGCACGCGACAA
NONE
OsAffx.5828.2.S1_at--603--3353Chr12:26983148..26983172 (25 bp)
CACGCGACAAGTGGCTGCGGCAGCT
NONE
OsAffx.5828.2.S1_at--159--1613Chr12:26983169..26983193 (25 bp)
AGCTGCTCAAGTCAAGCTTGCCCTG
NONE
OsAffx.5828.2.S1_at--168--4534Chr12:26983563..26983587 (25 bp)
GCCGCCCATTCGTCAAGAAGGATTT
NONE
OsAffx.5828.2.S1_at--47--5753Chr12:26983434..26983621 (25 bp)
GACGGCGCGGCGTCCTGATCTTCGA
NONE
OsAffx.5828.2.S1_at--649--8395Chr02:32258586..32258756 (25 bp)
GGCGCGGCGTCCTGATCTTCGAGCT
NONE
OsAffx.5828.2.S1_at--730--9372Chr12:26983685..26983709 (25 bp)
TCGAGGTCCACGATAGCGGCGACGG
NONE
OsAffx.5828.2.S1_at--1120--6173Chr02:32258841..32258865 (25 bp)
GAGGACGCTGATGTTGGCGAGGCGA
NONE
OsAffx.5828.2.S1_at--948--1434Chr12:26983740..26983764 (25 bp)
AGAACGTGACAAGCGAGGCGGTGCA
NONE
OsAffx.5828.2.S1_at--77--8631Chr08:9469368..9469392 (25 bp)
TGGTGTGCGACTAGGCGCCGCAACA
LOC_Os08g15590
OsAffx.5828.2.S1_at--447--3551Chr08:9469336..9469360 (25 bp)
CATCGGTATGACATGGCCAGCGAAG
LOC_Os08g15590
Target Sequence 
AGCCAGCCGTGGGTGCACGCGACAAGTGGCTGCGGCAGCTGCTCAAGTCAAGCTTGCCCTGCCGCCCCGCTGCCGCCATG
GAGCTCGCACCCGCCCAGCTCGTGCCGAACTCGCCGACGCCTCCCCCACACACGCGGCCGCGTTCCCTCCGCCGCCTGCC
AACTGCTGCCACATTCGCCCGTCGCTGCTCCGCTCGCACCCCGCCGCCGCGCTTGCCCTCCACCGTTCCGCCCGCCGCCC
ATTCGTCAAGAAGGATTTGAGGTCCACGACGGCGCGGCGTCCTGATCTTCGAGCTCGTCCGCCGCTCGCTTCGTCCCCTC
TAATACTGCGTCGTTGGCAATCATGCGTCGCTTCGTCGAGGTCCACGATAGCGGCGACGGAGGACGCTGATGTTGGCGAG
GCGAGGCCGGAGAACGTGACAAGCGAGGCGGTGCAGCCGTGGTGTGCGACTAGGCGCCGCAACAGCTCAGCCATCGGTAT
GACATGGCCAGCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5828.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis