Browse Element(s) Details


OsAffx.5830.1.S1_x_at

Description tigr:9636.m01592
TID=OsAffx.5830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1586011/11hypothetical protein
LOC_Os09g037401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15830OsAffx.15729.1.S1_at1/118+9606649..9618112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15830Os.51348.1.S1_x_at1/118+9606649..9618112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15840Os.5876.1.S1_x_at11/118+9622252..9627829zinc finger family protein, putative, expressed
LOC_Os08g15840Os.5876.2.S1_at7/118+9622252..9627829zinc finger family protein, putative, expressed
LOC_Os08g15850OsAffx.5829.1.S1_at11/118+9627728..9628455hypothetical protein
LOC_Os08g15860OsAffx.5830.1.S1_x_at11/118+9639840..9640295hypothetical protein
LOC_Os08g15870OsAffx.19542.3.S1_x_at2/118+9642076..9646580retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15880OsAffx.5831.1.S1_at11/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15880OsAffx.29724.6.S1_x_at1/118+9659514..9665037NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5830.1.S1_x_at--503--3471Chr08:9640059..9640083 (25 bp)
CAGGGCAGAATCAGCAGCTCCGGCG
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--738--4691Chr08:9639995..9640019 (25 bp)
GCGGCACGACGGCAGAACATGCGAG
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--701--10192Chr09:1889462..1889486 (25 bp)
TATTCGGCGCGGATGGACGGTGCAG
LOC_Os09g03740
OsAffx.5830.1.S1_x_at--866--7751Chr08:9639883..9639907 (25 bp)
GGTGCAGATTAATCCGAATGATTTC
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--814--7331Chr08:9639882..9639906 (25 bp)
GTGCAGATTAATCCGAATGATTTCA
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--870--5031Chr08:9639880..9639904 (25 bp)
GCAGATTAATCCGAATGATTTCACC
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--900--1251Chr08:9639878..9639902 (25 bp)
AGATTAATCCGAATGATTTCACCTG
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--1083--6551Chr08:9639877..9639901 (25 bp)
GATTAATCCGAATGATTTCACCTGT
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--693--131Chr08:9639876..9639900 (25 bp)
ATTAATCCGAATGATTTCACCTGTA
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--862--10491Chr08:9639875..9639899 (25 bp)
TTAATCCGAATGATTTCACCTGTAG
LOC_Os08g15860
OsAffx.5830.1.S1_x_at--587--92112Chr06:19594926..19594973 (25 bp)
TCCGAATGATTTCACCTGTAGGATT
NONE
Target Sequence 
CAGGGCAGAATCAGCAGCTCCGGCGGCGGCAATCCACGCGGGGAGGATCTCTAGCGAGGATGCGGCGGCACGACGGCAGA
ACATGCGAGGAGGAGGAGGAGAAGCAAAGTCTTCGCGCGTGGAGCGATGTCTTCGCGGCTGGAGGAGGAGGAGTGAAGTA
TTCGGCGCGGATGGACGGTGCAGATTAATCCGAATGATTTCACCTGTAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5830.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis