Browse Element(s) Details


OsAffx.5844.1.S1_at

Description tigr:9636.m01677
TID=OsAffx.5844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1669010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16690OsAffx.5844.1.S1_at10/118+10201181..10202956hypothetical protein
LOC_Os08g16690Os.54043.1.S1_at1/118+10201181..10202956hypothetical protein
LOC_Os08g16700OsAffx.5845.1.S1_at11/118+10206743..10207506hypothetical protein
LOC_Os08g16710Os.54043.1.S1_at11/118+10211422..10214225F-box domain containing protein, expressed
LOC_Os08g16720Os.18628.1.S1_at11/118+10215452..10216473transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g16730NANA8+10221180..10221476hypothetical protein
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5844.1.S1_at--710--5251Chr08:10202661..10202685 (25 bp)
GAATCTGAGGGAAGCCAGCCTGAAC
LOC_Os08g16690
OsAffx.5844.1.S1_at--315--5491Chr08:10202640..10202664 (25 bp)
GAACATAGATTTTGGCCAACTCTCA
LOC_Os08g16690
OsAffx.5844.1.S1_at--571--8451Chr08:10202627..10202651 (25 bp)
GGCCAACTCTCAAGTGTTCTATCAA
LOC_Os08g16690
OsAffx.5844.1.S1_at--733--1971Chr08:10202592..10202616 (25 bp)
ACTGAAGTTTGCTCCGCATATTGAG
LOC_Os08g16690
OsAffx.5844.1.S1_at--1032--5931Chr08:10202478..10202594 (25 bp)
GAGCACCTTGAAATTCAGACTCTTG
LOC_Os08g16690
OsAffx.5844.1.S1_at--837--10271Chr08:10202388..10202412 (25 bp)
TTTGCAAGCCTCAAACATGTGTCCC
LOC_Os08g16690
OsAffx.5844.1.S1_at--168--791Chr08:10202372..10202396 (25 bp)
ATGTGTCCCTGACTGGTGCCAAGCA
LOC_Os08g16690
OsAffx.5844.1.S1_at--511--4391Chr08:10202355..10202379 (25 bp)
GCCAAGCACCGCGAAAATCAAATGT
LOC_Os08g16690
OsAffx.5844.1.S1_at--218--10351Chr08:10202317..10202341 (25 bp)
TTTACTGTCCAAAGCAGGCTCTCTT
LOC_Os08g16690
OsAffx.5844.1.S1_at--1036--5731NONE
GACGGATCATGCCAGGGTGCTATTT
NONE
OsAffx.5844.1.S1_at--29--5091Chr08:10201241..10201265 (25 bp)
GCACCTCAAGGTTCAGATTCTTATG
LOC_Os08g16690
Target Sequence 
GAATCTGAGGGAAGCCAGCCTGAACATAGATTTTGGCCAACTCTCAAGTGTTCTATCAATAGATTCTTTACTGAAGTTTG
CTCCGCATATTGAGCACCTTGAAATTCAGACTCTTGATACAGAATTGGATAAAGAAAAGATTGATGAAGACTCCCTAAAT
TCAGAGATAAGCAGTGACTTGTTTGCAAGCCTCAAACATGTGTCCCTGACTGGTGCCAAGCACCGCGAAAATCAAATGTG
CTTTATGAAGTTTTTACTGTCCAAAGCAGGCTCTCTTCAAACATTTGCTGTCACTTTTATGTTTGATGATGATGGAAAGA
GCGAATGGTTTGAAAATAAATGCAAAGAGTTAATCGAGTGCCAAAAGGCTTCACCCCAACTTTTGTTGACAGCAAAAGTG
ACACAAGACGGATCATGCCAGGGTGCTATTTTAGATCAGCTTACGGGGCACCTCAAGGTTCAGATTCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis