Browse Element(s) Details


OsAffx.5874.1.S1_at

Description tigr:9636.m01879
TID=OsAffx.5874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1915011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5874.1.S1_at--351--10652Chr12:16054426..16054748 (25 bp)
TTCCCGTGCAAGTGCGCGACGACGA
NONE
OsAffx.5874.1.S1_at--580--4571Chr08:11452706..11452730 (25 bp)
GCGCGACGACGATCATGCAGAGGCT
LOC_Os08g19150
OsAffx.5874.1.S1_at--412--5791Chr08:11452702..11452726 (25 bp)
GACGACGATCATGCAGAGGCTGACG
LOC_Os08g19150
OsAffx.5874.1.S1_at--885--1731Chr08:11452658..11452682 (25 bp)
ACCTTGGCAATGACGGCCTCGACGA
LOC_Os08g19150
OsAffx.5874.1.S1_at--338--4091Chr08:11452639..11452663 (25 bp)
CGACGATGACCCATGGAACGGAGGC
LOC_Os08g19150
OsAffx.5874.1.S1_at--760--5792Chr08:11452499..11452523 (25 bp)
GACGCCGTGCTTGGCTAGAGGCCTC
LOC_Os08g19150
OsAffx.5874.1.S1_at--1046--10031Chr08:11452484..11452508 (25 bp)
TAGAGGCCTCTAGACTTGGCGACCT
LOC_Os08g19150
OsAffx.5874.1.S1_at--395--10031Chr08:11452474..11452498 (25 bp)
TAGACTTGGCGACCTCAGTGACGAT
LOC_Os08g19150
OsAffx.5874.1.S1_at--80--8471Chr08:11452468..11452492 (25 bp)
TGGCGACCTCAGTGACGATGGCAGC
LOC_Os08g19150
OsAffx.5874.1.S1_at--1069--1852Chr08:11452361..11452385 (25 bp)
ACGACGACAGTGGTGATGGCGCTCC
LOC_Os08g19150
OsAffx.5874.1.S1_at--882--5652Chr08:11452356..11452380 (25 bp)
GACAGTGGTGATGGCGCTCCTCTGT
LOC_Os08g19150
Target Sequence 
TTCCCGTGCAAGTGCGCGACGACGATCATGCAGAGGCTGACGGCGGCGGCTCGCAACGGCGACCTTGGCAATGACGGCCT
CGACGATGACCCATGGAACGGAGGCGGAGGCCGTGCGGGGCCGGAGGCCGTGCGGGGCCGGAGGCCGCATGGAGGCGGCA
GAGGTCGTGCCCCCACCCCGAATCCAGTGGGGGCAGAGCCGAGCGAATCTGGCGGGGGCGGACGCCGTGCTTGGCTAGAG
GCCTCTAGACTTGGCGACCTCAGTGACGATGGCAGCGAATGGCGACGTAGCAGACGACGACAGCGACGGCTGGCGACGGA
GACCTCAGCAGCAGTGGTGGATGGCGATGGCGACCTTGACGACGACAGTGGTGATGGCGCTCCTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis