Browse Element(s) Details


OsAffx.5875.1.S1_at

Description tigr:9636.m01884
TID=OsAffx.5875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1920011/11hypothetical protein
LOC_Os11g016301/11RNA polymerase Rpb1, domain 2 family protein
LOC_Os12g017101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19220Os.45976.1.S1_x_at1/118+11487582..11494927transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5875.1.S1_at--607--6411Chr08:11471125..11471149 (25 bp)
GATCTCGTCACGCTACCTGTTGGCG
LOC_Os08g19200
OsAffx.5875.1.S1_at--699--1831Chr08:11471116..11471140 (25 bp)
ACGCTACCTGTTGGCGGTGGCTGCC
LOC_Os08g19200
OsAffx.5875.1.S1_at--39--9371Chr08:11471064..11471088 (25 bp)
TCGACGTCATCATCTTCGTTCACGT
LOC_Os08g19200
OsAffx.5875.1.S1_at--989--3551Chr08:11471057..11471081 (25 bp)
CATCATCTTCGTTCACGTCATTGAA
LOC_Os08g19200
OsAffx.5875.1.S1_at--372--9691Chr08:11471045..11471069 (25 bp)
TCACGTCATTGAACTACTGCTCCCT
LOC_Os08g19200
OsAffx.5875.1.S1_at--587--3771Chr08:11471022..11471046 (25 bp)
CTCTCTACGCAATGTGTCTGGTCAT
LOC_Os08g19200
OsAffx.5875.1.S1_at--1082--2971Chr08:11471012..11471036 (25 bp)
AATGTGTCTGGTCATCCACTCTCCT
LOC_Os08g19200
OsAffx.5875.1.S1_at--144--4373Chr12:422437..422617 (25 bp)
CCACGATGCACATCCTCTTGGTGTT
LOC_Os12g01710
OsAffx.5875.1.S1_at--58--3491Chr08:11470855..11470879 (25 bp)
CAGGCCGCGTTGTCGGTGTCCCAGC
LOC_Os08g19200
OsAffx.5875.1.S1_at--321--4551Chr08:11470818..11470842 (25 bp)
GCCCATGCTGGAGCGATGAAAGAGC
LOC_Os08g19200
OsAffx.5875.1.S1_at--603--671Chr08:11470803..11470827 (25 bp)
ATGAAAGAGCGTGTCATCAATGCTG
LOC_Os08g19200
Target Sequence 
GATCTCGTCACGCTACCTGTTGGCGGTGGCTGCCGCGTCGCCGACCTCCTCCACCTCATCCTCGACGTCATCATCTTCGT
TCACGTCATTGAACTACTGCTCCCTCTCTACGCAATGTGTCTGGTCATCCACTCTCCTGCCATAGCACTCGACGTCGCCC
ACCCAGGGCGTGGCGGTGACTGTGGCTTTTGGGGCGTGACGGTGGCCACGATGCACATCCTCTTGGTGTTGTTCCAAGGG
GAGTCCTTCTACCAGACGTCGCATGCTCCCCAGGCCGCGTTGTCGGTGTCCCAGCCGGGAGGCGTGGGCCCATGCTGGAG
CGATGAAAGAGCGTGTCATCAATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis