Browse Element(s) Details


OsAffx.5892.1.S1_at

Description tigr:9636.m02124
TID=OsAffx.5892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Rer1 family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2176010/11RER1C protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21700OsAffx.5891.1.S1_s_at11/118+12960165..12964786DCL protein, chloroplast precursor, putative, expressed
LOC_Os08g21710Os.40855.4.S1_x_at4/118+12969782..12971899hypothetical protein
LOC_Os08g21710Os.40360.1.S1_x_at1/118+12969782..12971899hypothetical protein
LOC_Os08g21720OsAffx.17100.1.S1_at11/118+12976544..12976962MYST1, putative
LOC_Os08g21740NANA8+12981981..12983647retrotransposon protein, putative, unclassified
LOC_Os08g21760Os.26760.1.A1_at11/118+12987359..12993517RER1C protein, putative, expressed
LOC_Os08g21760OsAffx.5892.1.S1_at10/118+12987359..12993517RER1C protein, putative, expressed
LOC_Os08g21770NANA8+12994697..12998846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21780NANA8+12999660..13001544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21790NANA8+13003127..13006000hypothetical protein
LOC_Os08g21800NANA8+13006829..13010601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21804Os.52447.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804OsAffx.13218.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804Os.52447.1.S1_x_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21810OsAffx.17101.1.S1_at11/118+13016416..13017719hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006890biological_processretrograde vesicle-mediated transport, Golgi to ER
GO:0005794cellular_componentGolgi apparatus
GO:0005801cellular_componentGolgi cis-face
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5892.1.S1_at--99--4031Chr08:12993206..12993230 (25 bp)
CGTACGCGCTGCGTGTCTGGTTCGC
LOC_Os08g21760
OsAffx.5892.1.S1_at--860--9431Chr08:12993191..12993215 (25 bp)
TCTGGTTCGCGGGAGGGTACTACAT
LOC_Os08g21760
OsAffx.5892.1.S1_at--1042--6131Chr08:12993179..12993203 (25 bp)
GAGGGTACTACATCGTGACCTACGC
LOC_Os08g21760
OsAffx.5892.1.S1_at--631--7791Chr08:12992778..12993118 (25 bp)
GGTCGCCGAGATTGACATCTTCGTA
LOC_Os08g21760
OsAffx.5892.1.S1_at--506--3571Chr08:12992760..12992784 (25 bp)
CTTCGTAAGAGTATGGTTTGTGGGC
LOC_Os08g21760
OsAffx.5892.1.S1_at--955--6731Chr08:12992698..12992721 (24 bp)
GTTCATTGGATGCACGCAAACACGA
LOC_Os08g21760
OsAffx.5892.1.S1_at--650--3371Chr08:12991695..12991719 (25 bp)
CAGCAGTGCTGGGAAAACTAGGACA
LOC_Os08g21760
OsAffx.5892.1.S1_at--849--2391Chr08:12991681..12991705 (25 bp)
AAACTAGGACAAGTGTGTGTTGCAG
LOC_Os08g21760
OsAffx.5892.1.S1_at--1081--7471NONE
GTGTGTGTTGCAGGAGATGCTTTCA
NONE
OsAffx.5892.1.S1_at--886--7651Chr08:12988943..12988967 (25 bp)
GGGATTCTAGAAGATGGCCTTAAGT
LOC_Os08g21760
OsAffx.5892.1.S1_at--471--6231Chr08:12988931..12988955 (25 bp)
GATGGCCTTAAGTTGATTGAATTTG
LOC_Os08g21760
Target Sequence 
CGTACGCGCTGCGTGTCTGGTTCGCGGGAGGGTACTACATCGTGACCTACGCCCTCGGCATCTACATCCTCAACCTCCTC
ATCGCCTTCCTCTCGCCCCAGGTCGACCCCGAGGTCGCCGAGATTGACATCTTCGTAAGAGTATGGTTTGTGGGCGGTGA
GTGCCTGAGGGGTTCGGGGAGCGGGTGGGGGAGGTTCATTGGATGCACGCAAACACGATTAGTGGGGAGCAGCAGTGCTG
GGAAAACTAGGACAAGTGTGTGTTGCAGGAGATGCTTTCAGGGGATTCTAGAAGATGGCCTTAAGTTGATTGAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis