Browse Element(s) Details


OsAffx.5952.1.S1_at

Description tigr:9636.m02723
TID=OsAffx.5952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g275602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27490OsAffx.14941.4.S1_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_s_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.25952.1.S1_s_at1/118+16643638..16647767hypothetical protein
LOC_Os08g27500NANA8+16650539..16652968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g27520NANA8+16658309..16659979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27530OsAffx.17191.1.S1_at11/118+16660405..16663927hypothetical protein
LOC_Os08g27540Os.54366.1.S1_at11/118+16664745..16668048expressed protein
LOC_Os08g27550NANA8+16668802..16669157hypothetical protein
LOC_Os08g27560OsAffx.5952.1.S1_at2/118+16670594..16671058hypothetical protein
LOC_Os08g27570OsAffx.278.1.S1_at1/118+16672003..16676015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27580Os.50614.1.S1_at11/118+16678856..16682068expressed protein
LOC_Os08g27580Os.50614.2.S1_x_at11/118+16678856..16682068expressed protein
LOC_Os08g27590OsAffx.23483.1.S1_x_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27590OsAffx.25361.1.S1_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27600NANA8+16693020..16693802hypothetical protein
LOC_Os08g27610OsAffx.5954.5.S1_x_at5/118+16695379..16697978retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5952.1.S1_at--35--1691Chr08:16670061..16670085 (25 bp)
ACCAAGGGCCTAAGCAAGGGCGCAA
NONE
OsAffx.5952.1.S1_at--796--3511Chr08:16670151..16670175 (25 bp)
CATGAAGTACACAAGCTTCGCCGGG
NONE
OsAffx.5952.1.S1_at--1115--7991Chr08:16670175..16670199 (25 bp)
GGATGGACCTCATCGGAGAGCCATT
NONE
OsAffx.5952.1.S1_at--1123--3951Chr08:16670188..16670212 (25 bp)
CGGAGAGCCATTCGGCCGAAGACTA
NONE
OsAffx.5952.1.S1_at--1053--3711Chr08:16670203..16670227 (25 bp)
CCGAAGACTACGAGGCGAAAGCCTT
NONE
OsAffx.5952.1.S1_at--653--2051Chr08:16670261..16670285 (25 bp)
ACTTCACCAAGAAAAGGCCCAGCGG
NONE
OsAffx.5952.1.S1_at--45--1631Chr08:16670281..16670305 (25 bp)
AGCGGGCCAACATGCCTTCCGGAGG
NONE
OsAffx.5952.1.S1_at--217--8091Chr08:16670343..16670367 (25 bp)
GGAGCCCATGCAAGCAAAAGACACT
NONE
OsAffx.5952.1.S1_at--889--2311Chr08:16670359..16670787 (25 bp)
AAAGACACTACCAGGAGGCGGCGAA
NONE
OsAffx.5952.1.S1_at--986--8411Chr08:16670794..16670818 (25 bp)
GGCCGCGGCGAAAGCGCTCCAGATC
LOC_Os08g27560
OsAffx.5952.1.S1_at--355--2651Chr08:16670913..16670937 (25 bp)
AAGCCAACGCTAGCCTTGAAGCTCA
LOC_Os08g27560
Target Sequence 
ACCAAGGGCCTAAGCAAGGGCGCAAGACGGAGGCAAGGGACGAAGGCCGAGGAGACAACATGGGCGAAGGCCACATGGCG
AAAGCCGTGGCATGAAGTACACAAGCTTCGCCGGGGATGGACCTCATCGGAGAGCCATTCGGCCGAAGACTACGAGGCGA
AAGCCTTGCCACGAAGGGCATGGGTTTCGCCAAGTACCAAACTTCACCAAGAAAAGGCCCAGCGGGCCAACATGCCTTCC
GGAGGCTTCGCCAACAATTGGGCCGAGCTACTTGGCCCATTAGGAGCCCATGCAAGCAAAAGACACTACCAGGAGGCGGC
GAAGGCAGCGGCCGCGGCGAAAGCGCTCCAGATCAGGGACGTAATCCTTTCGTCTCAAATACCGGGGGCGTCTCAAGCTG
CCGCCTCGTCGCAACAAGCTACAACTTCGACAACACTCACCAACTCGCAAGCCAACGCTAGCCTTGAAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis