Browse Element(s) Details


OsAffx.5968.1.S1_at

Description tigr:9636.m02837
TID=OsAffx.5968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2866011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28610NANA8+17346571..17349647hypothetical protein
LOC_Os08g28620NANA8+17354449..17354676retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5968.1.S1_at--50--10151Chr08:17373356..17373380 (25 bp)
TATCCACGCGCTTCCAGTTCGATTC
LOC_Os08g28660
OsAffx.5968.1.S1_at--310--3431Chr08:17373370..17373394 (25 bp)
CAGTTCGATTCCTTCGGCCATCGTT
LOC_Os08g28660
OsAffx.5968.1.S1_at--917--8431Chr08:17373385..17373409 (25 bp)
GGCCATCGTTCTCGTGGAATCTTGT
LOC_Os08g28660
OsAffx.5968.1.S1_at--712--9511Chr08:17373394..17373418 (25 bp)
TCTCGTGGAATCTTGTGGACATCGG
LOC_Os08g28660
OsAffx.5968.1.S1_at--70--7471Chr08:17373421..17373445 (25 bp)
GTGTGAGAGCTCAGCCGGAAATGCA
LOC_Os08g28660
OsAffx.5968.1.S1_at--573--631Chr08:17373441..17373465 (25 bp)
ATGCACCCGGTCAACGGAAACGGCG
LOC_Os08g28660
OsAffx.5968.1.S1_at--512--2571Chr08:17373453..17373477 (25 bp)
AACGGAAACGGCGAAGCGACGAATG
LOC_Os08g28660
OsAffx.5968.1.S1_at--71--10251Chr08:17373485..17373509 (25 bp)
TTTGGACACCGGAGACAGCCGTGGC
LOC_Os08g28660
OsAffx.5968.1.S1_at--925--8431Chr08:17373507..17373531 (25 bp)
GGCCACGCTCCGACGTTCTTGAACG
LOC_Os08g28660
OsAffx.5968.1.S1_at--883--6711Chr08:17373521..17373545 (25 bp)
GTTCTTGAACGGCTCGATCTCGAAA
LOC_Os08g28660
OsAffx.5968.1.S1_at--771--5451Chr08:17373527..17373551 (25 bp)
GAACGGCTCGATCTCGAAAACAAAA
LOC_Os08g28660
Target Sequence 
TATCCACGCGCTTCCAGTTCGATTCCTTCGGCCATCGTTCTCGTGGAATCTTGTGGACATCGGGGGTGTGAGAGCTCAGC
CGGAAATGCACCCGGTCAACGGAAACGGCGAAGCGACGAATGGCGGCGCTTTGGACACCGGAGACAGCCGTGGCCACGCT
CCGACGTTCTTGAACGGCTCGATCTCGAAAACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis