Browse Element(s) Details


OsAffx.5969.1.S1_at

Description tigr:9636.m02841
TID=OsAffx.5969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DnaJ-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2870010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein
LOC_Os08g28700OsAffx.5969.1.S1_at10/118+17405588..17408068DnaJ domain containing protein, expressed
LOC_Os08g28710Os.26411.2.A1_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28710Os.26411.1.A1_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28710Os.26411.2.A1_x_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28720NANA8+17432161..17433393retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5969.1.S1_at--247--8551Chr08:17407433..17407457 (25 bp)
TGGAGAGCAAGCTGGCGTGCACCCT
LOC_Os08g28700
OsAffx.5969.1.S1_at--52--5491Chr08:17407381..17407405 (25 bp)
GAACATGAAGATCTCCCGCAACGTC
LOC_Os08g28700
OsAffx.5969.1.S1_at--755--9411NONE
TCGTCGATGCTAGCGGGAGAATGAA
NONE
OsAffx.5969.1.S1_at--1055--2571Chr08:17406044..17406068 (25 bp)
AACGGAGTCGGAGATTCTGTCGATC
LOC_Os08g28700
OsAffx.5969.1.S1_at--308--111Chr08:17406031..17406055 (25 bp)
ATTCTGTCGATCGAGGTGAAGCCGG
LOC_Os08g28700
OsAffx.5969.1.S1_at--33--5751Chr08:17405920..17405944 (25 bp)
GACGAGAAGCCGCACGACGTGTACC
LOC_Os08g28700
OsAffx.5969.1.S1_at--269--1451Chr08:17405916..17405940 (25 bp)
AGAAGCCGCACGACGTGTACCGCCG
LOC_Os08g28700
OsAffx.5969.1.S1_at--567--6971Chr08:17405726..17405750 (25 bp)
GTACCCCGGGTACGAGCTGGTGGTG
LOC_Os08g28700
OsAffx.5969.1.S1_at--696--7771Chr08:17405705..17405729 (25 bp)
GGTGCCGTCGGAGGGCATGCCAATC
LOC_Os08g28700
OsAffx.5969.1.S1_at--297--4411Chr08:17405664..17405688 (25 bp)
GCCACGGCAGCCTGAGGATCCGGTT
LOC_Os08g28700
OsAffx.5969.1.S1_at--295--3371Chr08:17405657..17405681 (25 bp)
CAGCCTGAGGATCCGGTTCGACGTC
LOC_Os08g28700
Target Sequence 
TGGAGAGCAAGCTGGCGTGCACCCTGGAGGAGCTCTACGTCGGCGTCACCAAGAACATGAAGATCTCCCGCAACGTCGTC
GATGCTAGCGGGAGAATGAAAACGGAGTCGGAGATTCTGTCGATCGAGGTGAAGCCGGGGTGGAAGAAGGGGACCAAGAT
CACGTTCCCGGGGAAGGGGAACCAGCAGTGGAGCCAGCTCCCCGCCGACCTGGTGTTCGTCGTCGACGAGAAGCCGCACG
ACGTGTACCGCCGCGACGGCAACGACCTGGTGGCGGAGGCCCGGGTCACGCTGGCCGACGCGCTGGGCGGCACGGTGGTC
GTCCTCGCCACGCTCGACGGCCGCGAGCTGCTGGTGGAGGTGAGCGGCGGCGGTGTCGCCGCCGGCGACGAGGACGACGA
CGACGAGGACCCCGTGGTGTACCCCGGGTACGAGCTGGTGGTGCCGTCGGAGGGCATGCCAATCGCCCGCGAGCCCGGCC
GCCACGGCAGCCTGAGGATCCGGTTCGACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis