Browse Element(s) Details


OsAffx.5995.1.S1_at

Description tigr:9636.m03141
TID=OsAffx.5995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3145010/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31410Os.6824.1.S1_at11/118+19294618..19299848Sulfate transporter 1.2, putative, expressed
LOC_Os08g31420Os.51880.1.S1_at11/118+19303216..19304628BTB/POZ domain containing protein, expressed
LOC_Os08g31430Os.51870.1.S1_at11/118+19308410..19309802BTB/POZ domain containing protein, expressed
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein
LOC_Os08g31480OsAffx.29453.1.S1_at11/118+19339110..19341220hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5995.1.S1_at--70--2651Chr08:19318714..19318738 (25 bp)
AACCATGAGCCGCTTCATCACGGTG
LOC_Os08g31450
OsAffx.5995.1.S1_at--837--2931Chr08:19318640..19318664 (25 bp)
AAGGCTGCGACGTGACCTTTCAGGT
LOC_Os08g31450
OsAffx.5995.1.S1_at--528--8931Chr08:19318628..19318652 (25 bp)
TGACCTTTCAGGTCGAGCGCAGCGA
LOC_Os08g31450
OsAffx.5995.1.S1_at--996--3451Chr08:19318620..19318644 (25 bp)
CAGGTCGAGCGCAGCGACTACGACG
LOC_Os08g31450
OsAffx.5995.1.S1_at--1100--2011Chr08:19318604..19318628 (25 bp)
ACTACGACGCGCACAGGGTGGTGCT
LOC_Os08g31450
OsAffx.5995.1.S1_at--837--8351NONE
GGCGGCGGAGACAGGCCTACTCAAA
NONE
OsAffx.5995.1.S1_at--957--5291Chr08:19317645..19317666 (22 bp)
GACAGGCCTACTCAAACTGTTTTTA
LOC_Os08g31450
OsAffx.5995.1.S1_at--846--3871Chr08:19317629..19317653 (25 bp)
CTGTTTTTATTCCTGGGAGGAACAT
LOC_Os08g31450
OsAffx.5995.1.S1_at--320--6131Chr08:19317599..19317623 (25 bp)
GAGTGGTTATTCTACATGAGACGTT
LOC_Os08g31450
OsAffx.5995.1.S1_at--831--5991Chr08:19317582..19317606 (25 bp)
GAGACGTTGTATGAATTACATCGTA
LOC_Os08g31450
OsAffx.5995.1.S1_at--53--6671Chr08:19315631..19315655 (25 bp)
GTTGCATGCCACAAGATGGAGATGA
LOC_Os08g31450
Target Sequence 
AACCATGAGCCGCTTCATCACGGTGCCGCCGCCAGCCATCTGCTGTCATCTCGAGCAGCTTCTGGAGAGCAAGGAAGGCT
GCGACGTGACCTTTCAGGTCGAGCGCAGCGACTACGACGCGCACAGGGTGGTGCTCTCGGCGCGGTCGCCGGTGTTCCGC
GCCCAGTTCTTCGGCCCAATGGCGGACACCGGCGGCGGAGACAGGCCTACTCAAACTGTTTTTATTCCTGGGAGGAACAT
TATAGGAGTGGTTATTCTACATGAGACGTTGTATGAATTACATCGTAAAGGAATTCCAATGCATTTTAGGAAGCATTCTA
ATAAATATTGGAAAGTTATTGAAGAAAGAATTGAGAAAAAACTTAGTAGTTGGAAAGATAGAATTATCATCACAATGGTA
ATTTTCAGGGCAACTCACTGGCTTCGGTTTTGGGCACAATTACAAAGGTGTGATGAGGATGAAGAGTTTTTGAAAGTTGC
ATGCCACAAGATGGAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis