Browse Element(s) Details


OsAffx.6009.1.S1_at

Description tigr:9636.m03284
TID=OsAffx.6009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic-type carbonic anhydrase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3284010/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32790Os.27691.1.S1_x_at1/118+20188979..20194170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32800OsAffx.13097.1.S1_s_at11/118+20197212..20202694transposon protein, putative, Mutator sub-class
LOC_Os08g32800Os.46613.1.S2_at4/118+20197212..20202694transposon protein, putative, Mutator sub-class
LOC_Os08g32810OsAffx.25936.1.S1_s_at9/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32810OsAffx.25936.7.S1_s_at8/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32810OsAffx.25936.2.S1_x_at5/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32810OsAffx.25936.5.S1_x_at2/118+20204366..20207404transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32820OsAffx.28545.4.S1_s_at11/118+20209716..20210741hypothetical protein
LOC_Os08g32830Os.10827.1.S1_x_at10/118+20210880..20214167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32830Os.46055.2.S1_x_at6/118+20210880..20214167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g32840OsAffx.6009.1.S1_at10/118+20218263..20220785Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g32850Os.27361.1.S1_at11/118+20226720..20233601Propionyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed
LOC_Os08g32860NANA8+20239247..20239629hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6009.1.S1_at--401--491Chr08:20218755..20218779 (25 bp)
ATCGGCGCCCAGGATGAGTTCCTGC
LOC_Os08g32840
OsAffx.6009.1.S1_at--868--6051NONE
GAGTTCCTGCACAAGTTGGAGCCAT
NONE
OsAffx.6009.1.S1_at--11--7731Chr08:20219388..20219412 (25 bp)
GGGTGGATCCAAACGTGGCCAAAGA
LOC_Os08g32840
OsAffx.6009.1.S1_at--183--4991Chr08:20219413..20219437 (25 bp)
GCATGATATCGTGTATTACCGCTAC
LOC_Os08g32840
OsAffx.6009.1.S1_at--1138--5071Chr08:20219463..20219487 (25 bp)
GCACCGAGGGAGTTATCTGGACCAT
LOC_Os08g32840
OsAffx.6009.1.S1_at--42--1051Chr08:20220330..20220354 (25 bp)
AGGTGCATACTGTGTCGCTGTCTCA
LOC_Os08g32840
OsAffx.6009.1.S1_at--24--7171Chr08:20220349..20220373 (25 bp)
GTCTCAGCTTGCACTTCTCAAGGCA
LOC_Os08g32840
OsAffx.6009.1.S1_at--1051--3731Chr08:20220365..20220386 (22 bp)
CTCAAGGCAGCTGTGGTTAATGGTA
LOC_Os08g32840
OsAffx.6009.1.S1_at--1154--8891Chr08:20220704..20220728 (25 bp)
TGAGAAGAATGCGAGGCCCCTCCAG
LOC_Os08g32840
OsAffx.6009.1.S1_at--433--8411Chr08:20220718..20220742 (25 bp)
GGCCCCTCCAGGACGTGAACAATAG
LOC_Os08g32840
OsAffx.6009.1.S1_at--506--1891Chr08:20220730..20220754 (25 bp)
ACGTGAACAATAGGAACATCGGCTT
LOC_Os08g32840
Target Sequence 
ATCGGCGCCCAGGATGAGTTCCTGCACAAGTTGGAGCCATATATTATTGAAGTTGCAGACCAAAAAGATAAGGAGAAGAT
TGTCAATGGTGGGGTGGATCCAAACGTGGCCAAAGAGCATGATATCGTGTATTACCGCTACATGGGCTCCTTAACCACAC
CACCTTGCACCGAGGGAGTTATCTGGACCATTGTCAGGAAGGTGCATACTGTGTCGCTGTCTCAGCTTGCACTTCTCAAG
GCAGCTGTGGTTAATGGTAATGAGAAGAATGCGAGGCCCCTCCAGGACGTGAACAATAGGAACATCGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis