Browse Element(s) Details


OsAffx.6017.1.S1_at

Description tigr:9636.m03391
TID=OsAffx.6017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3384010/11hypothetical protein
LOC_Os12g145301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33810Os.50542.1.S1_at11/118+21032164..21036917Biotin/lipoate A/B protein ligase family protein, expressed
LOC_Os08g33820Os.7890.2.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_a_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33830Os.10076.1.S1_at11/118+21040577..21046359Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33880OsAffx.6018.1.S1_at7/118+21072646..21073320AN1-like Zinc finger family protein
LOC_Os08g33890OsAffx.17318.1.S1_at11/118+21075161..21075632expressed protein
LOC_Os08g33900OsAffx.29496.1.S1_at11/118+21075932..21078628CAAX amino terminal protease family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6017.1.S1_at--602--9471Chr08:21053600..21053624 (25 bp)
TCTAGAAGCGGAACCCCCGACTACA
LOC_Os08g33840
OsAffx.6017.1.S1_at--631--4073Chr10:6677668..6677687 (20 bp)
CGACTACAATAATTCCTCATTGCAT
NONE
OsAffx.6017.1.S1_at--302--371Chr08:21053575..21053599 (25 bp)
ATAATTCCTCATTGCATTCGTCGTC
LOC_Os08g33840
OsAffx.6017.1.S1_at--927--3151Chr08:21053573..21053597 (25 bp)
AATTCCTCATTGCATTCGTCGTCAT
LOC_Os08g33840
OsAffx.6017.1.S1_at--622--3751Chr08:21053568..21053592 (25 bp)
CTCATTGCATTCGTCGTCATCAGGA
LOC_Os08g33840
OsAffx.6017.1.S1_at--199--71Chr08:21053565..21053589 (25 bp)
ATTGCATTCGTCGTCATCAGGAGGC
LOC_Os08g33840
OsAffx.6017.1.S1_at--174--4955Chr07:11897199..11897220 (22 bp)
GCATTCGTCGTCATCAGGAGGCAGT
NONE
OsAffx.6017.1.S1_at--159--96Chr11:11746703..11746726 (24 bp)
ATTCGTCGTCATCAGGAGGCAGTTC
NONE
OsAffx.6017.1.S1_at--57--8271NONE
GGCAGTTCTCACAGGAAAATCAGAC
NONE
OsAffx.6017.1.S1_at--523--1211Chr08:21052321..21052767 (25 bp)
AGTTCTCACAGGAAAATCAGACATC
LOC_Os08g33840
OsAffx.6017.1.S1_at--712--5452Chr12:8295645..8295670 (25 bp)
GAACGGTTGATGGATCTCGAAAGGA
LOC_Os12g14530
Target Sequence 
TCTAGAAGCGGAACCCCCGACTACAATAATTCCTCATTGCATTCGTCGTCATCAGGAGGCAGTTCTCACAGGAAAATCAG
ACATCAGAACAATCAAGTCAGATTTCAAGGCTTTGTCGCAGACTCTACGCCTACTTGATTACTCGAGAACGGTTGATGGA
TCTCGAAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis