Browse Element(s) Details


OsAffx.6024.1.S1_at

Description tigr:9636.m03499
TID=OsAffx.6024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g348707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34850Os.21363.1.S1_at10/118+21787690..21799814hypothetical protein
LOC_Os08g34850OsAffx.25854.1.S1_at5/118+21787690..21799814hypothetical protein
LOC_Os08g34850OsAffx.27864.4.S1_x_at1/118+21787690..21799814hypothetical protein
LOC_Os08g34860NANA8+21802898..21805298F-box domain containing protein
LOC_Os08g34870Os.51544.1.S1_at9/118+21810502..21811654hypothetical protein
LOC_Os08g34870OsAffx.6024.1.S1_at7/118+21810502..21811654hypothetical protein
LOC_Os08g34880OsAffx.17337.1.S1_at11/118+21818078..21820424expressed protein
LOC_Os08g34890NANA8+21834571..21836926F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6024.1.S1_at--108--4431NONE
GCCAGGCACGCAGGATTGCCAGTGT
NONE
OsAffx.6024.1.S1_at--950--5091NONE
GCACGCAGGATTGCCAGTGTGGCCA
NONE
OsAffx.6024.1.S1_at--140--1851NONE
ACGCAGGATTGCCAGTGTGGCCATC
NONE
OsAffx.6024.1.S1_at--1133--3471NONE
CAGGATTGCCAGTGTGGCCATCTCG
NONE
OsAffx.6024.1.S1_at--898--8451Chr08:21810581..21810605 (25 bp)
TGGCCATCTCGCTGGGCCACAAGCG
LOC_Os08g34870
OsAffx.6024.1.S1_at--947--9331Chr08:21810573..21810597 (25 bp)
TCGCTGGGCCACAAGCGAGACCTGA
LOC_Os08g34870
OsAffx.6024.1.S1_at--836--2671Chr08:21810561..21810585 (25 bp)
AAGCGAGACCTGAGGCTCAATAGTC
LOC_Os08g34870
OsAffx.6024.1.S1_at--114--4071Chr08:21810558..21810582 (25 bp)
CGAGACCTGAGGCTCAATAGTCCTC
LOC_Os08g34870
OsAffx.6024.1.S1_at--216--8891Chr08:21810551..21810575 (25 bp)
TGAGGCTCAATAGTCCTCTCGCTCA
LOC_Os08g34870
OsAffx.6024.1.S1_at--1061--271Chr08:21810542..21810566 (25 bp)
ATAGTCCTCTCGCTCAGCCAAATAG
LOC_Os08g34870
OsAffx.6024.1.S1_at--1004--7251Chr08:21810539..21810563 (25 bp)
GTCCTCTCGCTCAGCCAAATAGCGA
LOC_Os08g34870
Target Sequence 
GCCAGGCACGCAGGATTGCCAGTGTGGCCATCTCGCTGGGCCACAAGCGAGACCTGAGGCTCAATAGTCCTCTCGCTCAG
CCAAATAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis