Browse Element(s) Details


OsAffx.6035.1.S1_at

Description tigr:9636.m03576
TID=OsAffx.6035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3558011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35520Os.10731.1.A1_a_at11/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_x_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520OsAffx.18229.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.46610.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35530OsAffx.6034.1.S1_at11/118+22259709..22260897hypothetical protein
LOC_Os08g35540NANA8+22261951..22263344retrotransposon protein, putative, unclassified
LOC_Os08g35550NANA8+22265826..22266742hypothetical protein
LOC_Os08g35560Os.54856.1.S1_at10/118+22268417..22271226expressed protein
LOC_Os08g35560Os.49232.1.S1_x_at6/118+22268417..22271226expressed protein
LOC_Os08g35560Os.47346.1.A1_x_at1/118+22268417..22271226expressed protein
LOC_Os08g35570Os.55680.1.S1_at11/118+22275561..22276111expressed protein
LOC_Os08g35580OsAffx.6035.1.S1_at11/118+22280347..22280796expressed protein
LOC_Os08g35590OsAffx.17348.1.S1_at11/118+22281615..22282076hypothetical protein
LOC_Os08g35600Os.54867.1.S1_at11/118+22283036..22285772Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os08g35610NANA8+22290376..22291260transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6035.1.S1_at--691--8231Chr08:22280428..22280452 (25 bp)
GGCAACGGGCTGATCGTCTCGCCGT
LOC_Os08g35580
OsAffx.6035.1.S1_at--17--1531Chr08:22280516..22280540 (25 bp)
AGCAGAGGTGCTTCGACCTGGCCAA
LOC_Os08g35580
OsAffx.6035.1.S1_at--643--3811Chr08:22280569..22280593 (25 bp)
CTCCTCGTCGGAGACATGGCATTCT
LOC_Os08g35580
OsAffx.6035.1.S1_at--93--5671Chr08:22280581..22280605 (25 bp)
GACATGGCATTCTCGACGGCAGTGC
LOC_Os08g35580
OsAffx.6035.1.S1_at--43--4371Chr08:22280636..22280660 (25 bp)
CCACCGTTGCTAGGTGGCTCGTCGG
LOC_Os08g35580
OsAffx.6035.1.S1_at--1157--1851Chr08:22280677..22280701 (25 bp)
ACGGTTGGGACCTTCCAGCATTGGA
LOC_Os08g35580
OsAffx.6035.1.S1_at--987--7631Chr08:22280683..22280707 (25 bp)
GGGACCTTCCAGCATTGGATCAATG
LOC_Os08g35580
OsAffx.6035.1.S1_at--1066--9951Chr08:22280713..22280737 (25 bp)
TACCTTTGCCTCAAAACGTGGTCCA
LOC_Os08g35580
OsAffx.6035.1.S1_at--441--10271Chr08:22280717..22280741 (25 bp)
TTTGCCTCAAAACGTGGTCCATCAC
LOC_Os08g35580
OsAffx.6035.1.S1_at--717--7491Chr08:22280730..22280754 (25 bp)
GTGGTCCATCACGTCTTATATTATC
LOC_Os08g35580
OsAffx.6035.1.S1_at--301--7151Chr08:22280742..22280766 (25 bp)
GTCTTATATTATCCACCCGTCTTTG
LOC_Os08g35580
Target Sequence 
GGCAACGGGCTGATCGTCTCGCCGTCCTACCTCAGCAGCTGCCCCTGCGACGACGGCGGCCGGTGCTTCTTCCAGGACGG
CGTGGCGGAGCAGAGGTGCTTCGACCTGGCCAACCTCGTCACCGCCGTGCTCGGGCTGGCCCTCCTCGTCGGAGACATGG
CATTCTCGACGGCAGTGCCCGGCCGGTCGACGCAGTCGCAGGCCCTGGCCACCGTTGCTAGGTGGCTCGTCGGGCTCGCC
AAGGTCGCCACGGTTGGGACCTTCCAGCATTGGATCAATGCCTTTTACCTTTGCCTCAAAACGTGGTCCATCACGTCTTA
TATTATCCACCCGTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis