Browse Element(s) Details


OsAffx.6043.1.S1_at

Description tigr:9636.m03672
TID=OsAffx.6043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g365509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g36550OsAffx.6043.1.S1_at9/118+22939321..22941710hypothetical protein
LOC_Os08g36560OsAffx.6044.1.S1_at11/118+22943250..22944601emp24/gp25L/p24 family protein
LOC_Os08g36570Os.56199.1.S1_at9/118+22945023..22946523expressed protein
LOC_Os08g36580Os.51364.1.A1_at11/118+22947474..22948192expressed protein
LOC_Os08g36580OsAffx.24604.1.S1_at1/118+22947474..22948192expressed protein
LOC_Os08g36590Os.54549.1.S1_at11/118+22952678..22954761expressed protein
LOC_Os08g36600OsAffx.29562.1.S1_at11/118+22959336..22959707hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_s_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.13557.1.S1_x_at1/118+22961207..22961824hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6043.1.S1_at--315--2031NONE
ACTACCTCCCCGCTGACATAATTAT
NONE
OsAffx.6043.1.S1_at--221--3811Chr08:22941246..22941581 (25 bp)
CTCCCCGCTGACATAATTATCTTTA
LOC_Os08g36550
OsAffx.6043.1.S1_at--789--4751Chr08:22941240..22941264 (25 bp)
GCTGACATAATTATCTTTATCAAGA
LOC_Os08g36550
OsAffx.6043.1.S1_at--401--9731NONE
TCAAGAGTAGTGAAGCTTTGGCTCT
NONE
OsAffx.6043.1.S1_at--205--1571Chr08:22939545..22939569 (25 bp)
AGCTTTGGCTCTTTGTGGCATAGCT
LOC_Os08g36550
OsAffx.6043.1.S1_at--1052--10231Chr08:22939542..22939566 (25 bp)
TTTGGCTCTTTGTGGCATAGCTGGT
LOC_Os08g36550
OsAffx.6043.1.S1_at--181--3571Chr08:22939527..22939551 (25 bp)
CATAGCTGGTGCAGTTGGTTTGTTG
LOC_Os08g36550
OsAffx.6043.1.S1_at--174--7771Chr08:22939520..22939544 (25 bp)
GGTGCAGTTGGTTTGTTGGTGCAAG
LOC_Os08g36550
OsAffx.6043.1.S1_at--128--4891Chr08:22939493..22939517 (25 bp)
GCTTTGACTGACAAGGGCCCGTCTG
LOC_Os08g36550
OsAffx.6043.1.S1_at--515--10271Chr08:22939491..22939515 (25 bp)
TTTGACTGACAAGGGCCCGTCTGTG
LOC_Os08g36550
OsAffx.6043.1.S1_at--801--8951Chr08:22939485..22939509 (25 bp)
TGACAAGGGCCCGTCTGTGTGGACT
LOC_Os08g36550
Target Sequence 
ACTACCTCCCCGCTGACATAATTATCTTTATCAAGAGTAGTGAAGCTTTGGCTCTTTGTGGCATAGCTGGTGCAGTTGGT
TTGTTGGTGCAAGATGCTTTGACTGACAAGGGCCCGTCTGTGTGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis