Browse Element(s) Details


OsAffx.6069.1.S1_x_at

Description tigr:9636.m03878
TID=OsAffx.6069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3849011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38470OsAffx.17404.2.S1_at11/118+24213862..24215185F-box domain containing protein
LOC_Os08g38480Os.50479.1.S1_at11/118+24218884..24222997F-box domain containing protein, expressed
LOC_Os08g38490OsAffx.6069.1.S1_x_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38490OsAffx.6069.1.S1_at11/118+24224758..24225912F-box domain containing protein
LOC_Os08g38500NANA8+24226865..24227287transposon protein, putative, unclassified
LOC_Os08g38510OsAffx.29590.1.S1_at11/118+24231512..24231967hypothetical protein
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6069.1.S1_x_at--1139--911Chr08:24225361..24225385 (25 bp)
AGCGTAGACGGCTCCACGTACTGGA
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--573--8311Chr08:24225370..24225394 (25 bp)
GGCTCCACGTACTGGATCACCAGGG
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--966--1751Chr08:24225490..24225514 (25 bp)
ACCTGCAAGCTGACGGACGTGCGCG
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--343--1531Chr08:24225541..24225565 (25 bp)
AGCATGGCGACGAGCACCGACACCG
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--472--1851Chr08:24225550..24225574 (25 bp)
ACGAGCACCGACACCGACGTGTGGG
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--958--8931Chr08:24225695..24225719 (25 bp)
TGACGACGTCGACGCACTGTAGCAT
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--48--1911Chr08:24225700..24225724 (25 bp)
ACGTCGACGCACTGTAGCATCCGGG
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--36--3631Chr08:24225729..24225753 (25 bp)
CTTGTACGCGCACCGGCTGAGCGAC
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--812--8331Chr08:24225767..24225791 (25 bp)
GGCTGCAGTGCAGCGCGGTGAGGAT
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--353--6711Chr08:24225825..24225849 (25 bp)
GTTCGGCGCTTGTTACCGCCGGGAT
LOC_Os08g38490
OsAffx.6069.1.S1_x_at--1021--7651Chr08:24225845..24225869 (25 bp)
GGGATCTCCGGACCTTCGCCTACGT
LOC_Os08g38490
Target Sequence 
AGCGTAGACGGCTCCACGTACTGGATCACCAGGGACACCGAGAGGGTCATGTCGCTGGACCTCGGCGACGACGAGCGCGT
CGCCGCCGTCACGCCGCTGCTCCCGGCGCGCACGGCGGGGCCGGGCTGCACCTGCAAGCTGACGGACGTGCGCGGCAGGC
TCGGCGTCGCCGTCAGCGTCAGCATGGCGACGAGCACCGACACCGACGTGTGGGTGCTCGAAGGAGGAGGAGGCGGCGGC
GGCGAGCGGCGGTGGAGCCGGCGGTACAGCGTGCGGGTGCACGGCGTGGAGCAGCAGCTGGCGTGGCCGCACTTCGCCCA
CGGCGAGCACGTCCTGACGACGTCGACGCACTGTAGCATCCGGGGGTTCTTGTACGCGCACCGGCTGAGCGACGACGGGA
GGCGGCGGCTGCAGTGCAGCGCGGTGAGGATCAACGAGCGGCGGCCGGGGAAGGTGGTGGGCTCGTTCGGCGCTTGTTAC
CGCCGGGATCTCCGGACCTTCGCCTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6069.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis