Browse Element(s) Details


OsAffx.6076.1.S1_at

Description tigr:9636.m03906
TID=OsAffx.6076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3874011/11Glycosyltransferase QUASIMODO1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38710Os.29825.1.S1_a_at11/118+24342303..24346656Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os08g38720Os.50196.1.S1_x_at11/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38720Os.50196.2.S1_x_at3/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38730NANA8+24359580..24360044expressed protein
LOC_Os08g38740OsAffx.6076.1.S1_at11/118+24362472..24366048Glycosyltransferase QUASIMODO1, putative
LOC_Os08g38750NANA8+24367675..24368124hypothetical protein
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein
LOC_Os08g38780Os.55661.1.S1_at11/118+24384755..24385716CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os08g38790OsAffx.17410.1.S1_x_at11/118+24387967..24390216hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6076.1.S1_at--790--3551Chr08:24364982..24365006 (25 bp)
CATCTACGGTTCTATCTTCCTGAGA
LOC_Os08g38740
OsAffx.6076.1.S1_at--998--6031Chr08:24365003..24365027 (25 bp)
GAGATCTTCCCAAAGCTTAACAAGG
LOC_Os08g38740
OsAffx.6076.1.S1_at--592--7271Chr08:24365054..24365078 (25 bp)
GTCCAGCAGGACCTAAGTGCACTTT
LOC_Os08g38740
OsAffx.6076.1.S1_at--689--7811Chr08:24365101..24365125 (25 bp)
GGTCAATGGTGCTATCCAAACCTGT
LOC_Os08g38740
OsAffx.6076.1.S1_at--59--8831Chr08:24365146..24365170 (25 bp)
TGATAGGTATCTCAACTTCTCAAAC
LOC_Os08g38740
OsAffx.6076.1.S1_at--300--151Chr08:24365261..24365285 (25 bp)
ATTACTGATGTTTACCACTACTGGC
LOC_Os08g38740
OsAffx.6076.1.S1_at--461--8191Chr08:24365792..24365816 (25 bp)
GGAAGTTAGGAACACTCCCTGCTGG
LOC_Os08g38740
OsAffx.6076.1.S1_at--722--3831Chr08:24365810..24365834 (25 bp)
CTGCTGGTCTTGTGACATTCTGGAA
LOC_Os08g38740
OsAffx.6076.1.S1_at--1141--3251Chr08:24365836..24365860 (25 bp)
CAAACATTCCCTCTTGATCACAAAT
LOC_Os08g38740
OsAffx.6076.1.S1_at--234--7651Chr08:24365913..24365937 (25 bp)
GGGAGCAGCTGTGATACACTACAAC
LOC_Os08g38740
OsAffx.6076.1.S1_at--1016--8151Chr08:24365945..24365969 (25 bp)
GGAAACCTTGGCTCGAGATTGCAAT
LOC_Os08g38740
Target Sequence 
CATCTACGGTTCTATCTTCCTGAGATCTTCCCAAAGCTTAACAAGGTTTTATTTCTTGATGATGATATTGTAGTCCAGCA
GGACCTAAGTGCACTTTGGTCAATAGACCTCAAAGGTAAGGTCAATGGTGCTATCCAAACCTGTGGAGAGACTTTCCATA
GGTTTGATAGGTATCTCAACTTCTCAAACCCTCTTATTGCCAAGAATTTTGAACGGCGTGCATGCGGCTGGGCATATGGC
ATGAACATGTTTGATTTGTCTGAGTGGAGAAAGCGTAATATTACTGATGTTTACCACTACTGGCAGGAACAAAATGAACA
TAGACTACTGTGGAAGTTAGGAACACTCCCTGCTGGTCTTGTGACATTCTGGAACCAAACATTCCCTCTTGATCACAAAT
GGCATCTACTGGGGCTAGGATACAAGCCAAATGTGAATCAAAAGGATATCGAGGGAGCAGCTGTGATACACTACAACGGG
AATCGGAAACCTTGGCTCGAGATTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis