Browse Element(s) Details


OsAffx.6077.1.S1_at

Description tigr:9636.m03916
TID=OsAffx.6077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3884011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38790OsAffx.17410.1.S1_x_at11/118+24387967..24390216hypothetical protein
LOC_Os08g38800OsAffx.6079.1.S1_at1/118+24391718..24396287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38810Os.49777.1.S1_at11/118+24400418..24402095RAFTIN1a protein, putative, expressed
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein
LOC_Os08g38840OsAffx.6077.1.S1_at11/118+24415173..24417501hypothetical protein
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6077.1.S1_at--1080--3931Chr08:24416951..24416975 (25 bp)
CGGCTCCGGGCACGACGGAGACAGA
LOC_Os08g38840
OsAffx.6077.1.S1_at--261--4251Chr08:24417007..24417031 (25 bp)
CCGTCGGCGGTCGAGCTTGCAGCGA
LOC_Os08g38840
OsAffx.6077.1.S1_at--1059--8531Chr08:24417123..24417147 (25 bp)
TGGACCCGTCCCCAAGCGGCTGGAT
LOC_Os08g38840
OsAffx.6077.1.S1_at--218--9311Chr08:24417154..24417178 (25 bp)
TCCCTGGCTCAGATCTGGCCAGGGT
LOC_Os08g38840
OsAffx.6077.1.S1_at--58--1071Chr08:24417174..24417198 (25 bp)
AGGGTGCTGTCGGTCCAGCGGCAAC
LOC_Os08g38840
OsAffx.6077.1.S1_at--128--7791Chr08:24417185..24417209 (25 bp)
GGTCCAGCGGCAACGGGTGCGGAGT
LOC_Os08g38840
OsAffx.6077.1.S1_at--671--7551Chr08:24417302..24417326 (25 bp)
GTGGCCGCAGCTGTGTCGAGGTGAC
LOC_Os08g38840
OsAffx.6077.1.S1_at--662--4751Chr08:24417388..24417412 (25 bp)
GCTGACGGCAACGATGACAGTGGCC
LOC_Os08g38840
OsAffx.6077.1.S1_at--1028--5151Chr08:24417395..24417419 (25 bp)
GCAACGATGACAGTGGCCGCATCTG
LOC_Os08g38840
OsAffx.6077.1.S1_at--1047--3911Chr08:24417420..24417444 (25 bp)
CGGCAAAGGCGGCTACCGCTCGCTT
LOC_Os08g38840
OsAffx.6077.1.S1_at--78--9971Chr08:24417433..24417457 (25 bp)
TACCGCTCGCTTCGGTGGCAGATGA
LOC_Os08g38840
Target Sequence 
CGGCTCCGGGCACGACGGAGACAGATCCGCACCCCCTAGCGGCGGATCTAGCCTCCCCGTCGGCGGTCGAGCTTGCAGCG
ACGGCGACCGGAGGAGGCAAGGGGCGGCGTCACGGCTCGACGAGGAAGGCGACAGCGGGGGTAGCGGCGGCGTGCCCCGG
CGTGGGCGGCCGTGGACCCGTCCCCAAGCGGCTGGATCCGGCCTCCCTGGCTCAGATCTGGCCAGGGTGCTGTCGGTCCA
GCGGCAACGGGTGCGGAGTGGAGGCCGGCGATATGGCCGGCGTGGCGGTGGCAGTGGCAGACAGCGACAGCGACTGGGCA
GCGCCCGTGGTGGTGGCGGCCATCGACGACAGTGGCCGCAGCTGTGTCGAGGTGACGGCGGCGGCGGCTGTGGAGGCAAT
GGCTGCTGCGGCTGGCGAGGCGGCGCCCGTCGTCGTGGCTGACGGCAACGATGACAGTGGCCGCATCTGCGGCAAAGGCG
GCTACCGCTCGCTTCGGTGGCAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis