Browse Element(s) Details


OsAffx.6116.1.S1_at

Description tigr:9636.m04364
TID=OsAffx.6116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pectinesterase inhibitor domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4289011/11pectinesterase inhibitor domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42860OsAffx.20354.1.S1_at2/118+26965938..26968659retrotransposon protein, putative, unclassified
LOC_Os08g42870Os.50389.1.S1_at11/118+26970473..26976632expressed protein
LOC_Os08g42880NANA8+26982758..26983288hypothetical protein
LOC_Os08g42890OsAffx.6116.1.S1_at11/118+26985960..26986502pectinesterase inhibitor domain containing protein
LOC_Os08g42900OsAffx.6117.1.S1_at11/118+26987795..26988501NA
LOC_Os08g42910NANA8+26990641..26994443Methionine aminopeptidase 2, putative, expressed
LOC_Os08g42920Os.9188.1.S1_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42920Os.9188.1.S1_x_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42930Os.53729.1.S1_at11/118+26997252..27000882NB-ARC domain containing protein, expressed
LOC_Os08g42940OsAffx.17484.1.S1_x_at11/118+27001660..27003648expressed protein
LOC_Os08g42950Os.25017.1.S1_at11/118+27009417..27012121haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6116.1.S1_at--150--1711Chr08:26986083..26986107 (25 bp)
ACCAACCACACCGAGTGCGTGAAGA
LOC_Os08g42890
OsAffx.6116.1.S1_at--1029--7291Chr08:26986097..26986121 (25 bp)
GTGCGTGAAGATGCTCAGCGCCGAC
LOC_Os08g42890
OsAffx.6116.1.S1_at--1021--4471Chr08:26986209..26986233 (25 bp)
GCCGTGTACGGCAAGTTCCTGGAGA
LOC_Os08g42890
OsAffx.6116.1.S1_at--1155--5151Chr08:26986219..26986243 (25 bp)
GCAAGTTCCTGGAGAATCACGGCCA
LOC_Os08g42890
OsAffx.6116.1.S1_at--153--1131Chr08:26986267..26986291 (25 bp)
AGTGCTGGTGGATGTACGACCTCGC
LOC_Os08g42890
OsAffx.6116.1.S1_at--847--4551Chr08:26986336..26986360 (25 bp)
GCGCGTACCTCGACGTGGTCAGGCA
LOC_Os08g42890
OsAffx.6116.1.S1_at--247--8591Chr08:26986351..26986375 (25 bp)
TGGTCAGGCACCAGCTGGCCGGTTA
LOC_Os08g42890
OsAffx.6116.1.S1_at--842--1571Chr08:26986363..26986387 (25 bp)
AGCTGGCCGGTTACTACGCCGGGAT
LOC_Os08g42890
OsAffx.6116.1.S1_at--325--1831Chr08:26986378..26986402 (25 bp)
ACGCCGGGATCATGTGCGACAACAT
LOC_Os08g42890
OsAffx.6116.1.S1_at--218--2211Chr08:26986396..26986420 (25 bp)
ACAACATGATCGTCCGCCGCTCGAA
LOC_Os08g42890
OsAffx.6116.1.S1_at--936--3971Chr08:26986429..26986453 (25 bp)
CGGTGGCCGACATCGACAGGACGAC
LOC_Os08g42890
Target Sequence 
ACCAACCACACCGAGTGCGTGAAGATGCTCAGCGCCGACCGGCGGAGCGCCAGGGCCACCACCGTGCACCAGCTCGCCGG
CATCGCGGTCGACATCGCCGCCGCCACCGTGAAGTCCAGCGCCGCCGCCGTGTACGGCAAGTTCCTGGAGAATCACGGCC
AGGTCCTCGAGCTGACGCTGCTCGAGTGCTGGTGGATGTACGACCTCGCCGCCGGCGAGGCCCAGGCGGCGGTCGACGCC
TACAGCTCCGGCGGCGCGTACCTCGACGTGGTCAGGCACCAGCTGGCCGGTTACTACGCCGGGATCATGTGCGACAACAT
GATCGTCCGCCGCTCGAAGGTCTCTCCGGTGGCCGACATCGACAGGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis