Browse Element(s) Details


OsAffx.6186.1.S1_at

Description tigr:9637.m00400
TID=OsAffx.6186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0648011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06464OsAffx.6185.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.3399.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.2.A1_at6/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464OsAffx.23696.1.S1_x_at2/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.5.S1_x_at1/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06480OsAffx.6186.1.S1_at11/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06480Os.54774.1.S1_at1/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06480Os.54774.1.S1_x_at1/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06499Os.10281.2.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17576.1.S1_s_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.1.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_x_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.2.S1_x_at10/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_at9/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.35889.1.S1_at1/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6186.1.S1_at--643--5951Chr09:3066951..3066975 (25 bp)
GAGAATTTGGTACTTAATAGCCGTC
LOC_Os09g06480
OsAffx.6186.1.S1_at--998--1671Chr09:3066933..3066957 (25 bp)
AGCCGTCAACAGTCATTATTCACAA
LOC_Os09g06480
OsAffx.6186.1.S1_at--996--5551Chr09:3066908..3066932 (25 bp)
GAAATGGTCCAATACTAGTAGGCCC
LOC_Os09g06480
OsAffx.6186.1.S1_at--133--10051Chr09:3066893..3066917 (25 bp)
TAGTAGGCCCAACGAAGGCTGAAAT
LOC_Os09g06480
OsAffx.6186.1.S1_at--475--1491Chr09:3066865..3066889 (25 bp)
AGCAAGCCAGCTTGACTTGTATGAA
LOC_Os09g06480
OsAffx.6186.1.S1_at--973--10751Chr09:3066854..3066878 (25 bp)
TTGACTTGTATGAAGGTACCTTTCC
LOC_Os09g06480
OsAffx.6186.1.S1_at--943--8951Chr09:3066844..3066868 (25 bp)
TGAAGGTACCTTTCCAAATTCCAAT
LOC_Os09g06480
OsAffx.6186.1.S1_at--323--3291Chr09:3066830..3066854 (25 bp)
CAAATTCCAATTTCCTTAGCCGCCA
LOC_Os09g06480
OsAffx.6186.1.S1_at--85--1691Chr09:3066800..3066824 (25 bp)
AGCCTATCTCACTACCTGCAGAAGT
LOC_Os09g06480
OsAffx.6186.1.S1_at--790--6151Chr09:3066449..3066473 (25 bp)
GGGATGGGAGACATTTTCCACCCGA
LOC_Os09g06480
OsAffx.6186.1.S1_at--700--10271Chr09:3066435..3066459 (25 bp)
TTTCCACCCGATCATCAGTTCGGAA
LOC_Os09g06480
Target Sequence 
GAGAATTTGGTACTTAATAGCCGTCAACAGTCATTATTCACAAGAAATGGTCCAATACTAGTAGGCCCAACGAAGGCTGA
AATACAAGCAAGCCAGCTTGACTTGTATGAAGGTACCTTTCCAAATTCCAATTTCCTTAGCCGCCACTACCAGCCTATCT
CACTACCTGCAGAAGTGGAGGGCCCCGAGGGTGGTGCAGGGACCCAACAGGTATGGGGATGGGAGACATTTTCCACCCGA
TCATCAGTTCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis