Browse Element(s) Details


Os.10281.2.S1_x_at

Description gb:AK062451.1
DB_XREF= gi:32972469
TID=Os.10281.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10281 (NCBI UniGene Cluster)
UG_TITLE=Putative sulphate transporter (Sultr4-1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C04, full insert sequence.
FL= gb:AK062451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0649910/11Sulfate transporter 4.1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06464OsAffx.6185.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.3399.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.2.A1_at6/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464OsAffx.23696.1.S1_x_at2/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.5.S1_x_at1/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06480OsAffx.6186.1.S1_at11/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06480Os.54774.1.S1_at1/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06480Os.54774.1.S1_x_at1/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06499Os.10281.2.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17576.1.S1_s_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.1.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_x_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.2.S1_x_at10/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_at9/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.35889.1.S1_at1/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06520OsAffx.17577.1.S1_at11/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.1.S1_x_at2/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.5.S1_x_at1/119+3095690..3099658hypothetical protein
LOC_Os09g06530OsAffx.29733.1.S1_at11/119+3103108..3104511hypothetical protein
LOC_Os09g06540OsAffx.2022.1.S1_at1/119+3108254..3110685retrotransposon protein, putative, unclassified
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10281.2.S1_x_at--859--9411NONE
TCGTGCCCCAAGCAATGTCATATGC
NONE
Os.10281.2.S1_x_at--1020--651Chr09:3074486..3074510 (25 bp)
ATGCAAAGTTGGCTGGGCTTCACCC
LOC_Os09g06499
Os.10281.2.S1_x_at--742--6791Chr09:3074520..3074643 (25 bp)
GTTATACACAGGCTTTGTCCCGCTA
LOC_Os09g06499
Os.10281.2.S1_x_at--727--10811Chr09:3074633..3074657 (25 bp)
TTGTCCCGCTATTTGTCTATGCAAT
LOC_Os09g06499
Os.10281.2.S1_x_at--691--8451Chr09:3074661..3074685 (25 bp)
TGGCTCATCGAGACAGTTGGCAGTG
LOC_Os09g06499
Os.10281.2.S1_x_at--1152--3751Chr09:3074696..3074720 (25 bp)
CTCTTGTCTCTCTTCTAGTTTCTAA
LOC_Os09g06499
Os.10281.2.S1_x_at--867--3571Chr09:3074710..3074734 (25 bp)
CTAGTTTCTAATGTCCTCGGTGGTA
LOC_Os09g06499
Os.10281.2.S1_x_at--614--7811Chr09:3074825..3074849 (25 bp)
GGTAATTCTATTCTACTCTGGGTAG
LOC_Os09g06499
Os.10281.2.S1_x_at--282--9471Chr09:3074841..3074865 (25 bp)
TCTGGGTAGCTGGTGTTCTTTTTTA
LOC_Os09g06499
Os.10281.2.S1_x_at--278--5631Chr09:3074906..3074930 (25 bp)
GACACATCTACACATATTCCTTTGG
LOC_Os09g06499
Os.10281.2.S1_x_at--1138--71Chr09:3074921..3074945 (25 bp)
ATTCCTTTGGAATTTTACACTTATG
LOC_Os09g06499
Target Sequence 
TCGTGCCCCAAGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTATACACAGGCTTTGTCCCGCTA
TTTGTCTATGCAATTTTTGGCTCATCGAGACAGTTGGCAGTGGGTCCAGTGGCTCTTGTCTCTCTTCTAGTTTCTAATGT
CCTCGGTGGTATTGTTGATTCATCTAGTGAGCTGTACACAGAATTAGCCATATTATTGGCATTCATGGTTGGTGTATTAG
AATGCTTGATGGGATTGCTAAGGTAATTCTATTCTACTCTGGGTAGCTGGTGTTCTTTTTTAAGTCATTTTACAGTAGAT
AGGACATAATTTAAGAAGTATGGACACATCTACACATATTCCTTTGGAATTTTACACTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10281.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis