Browse Element(s) Details


OsAffx.29733.1.S1_at

Description tigr:9637.m00407
TID=OsAffx.29733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0653011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06499Os.10281.2.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17576.1.S1_s_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.1.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_x_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.2.S1_x_at10/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_at9/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.35889.1.S1_at1/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06520OsAffx.17577.1.S1_at11/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.1.S1_x_at2/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.5.S1_x_at1/119+3095690..3099658hypothetical protein
LOC_Os09g06530OsAffx.29733.1.S1_at11/119+3103108..3104511hypothetical protein
LOC_Os09g06540OsAffx.2022.1.S1_at1/119+3108254..3110685retrotransposon protein, putative, unclassified
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified
LOC_Os09g06560Os.53771.1.A2_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06560Os.53771.1.A1_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06570Os.50216.1.S1_at11/119+3125678..3126160expressed protein
LOC_Os09g06580OsAffx.24386.2.S1_at11/119+3128207..3129193expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29733.1.S1_at--359--10351Chr09:3103858..3103882 (25 bp)
TTTTTCCGGATCTGAGGTCTTGGCT
LOC_Os09g06530
OsAffx.29733.1.S1_at--635--2171Chr09:3103780..3103804 (25 bp)
ACACGCTCCGCGCAGATTTAACATG
LOC_Os09g06530
OsAffx.29733.1.S1_at--204--191Chr09:3103765..3103789 (25 bp)
ATTTAACATGCCATCATCCTCTGTA
LOC_Os09g06530
OsAffx.29733.1.S1_at--33--9171Chr09:3103699..3103723 (25 bp)
TGCGCCCCACGCTAGATCGGGAGAA
LOC_Os09g06530
OsAffx.29733.1.S1_at--615--5071Chr09:3103636..3103660 (25 bp)
GCACCACCCGTGCAGATCGGAGGAT
LOC_Os09g06530
OsAffx.29733.1.S1_at--338--511Chr09:3103606..3103630 (25 bp)
ATCGTCCCTTGCTCTATGAGGTGGT
LOC_Os09g06530
OsAffx.29733.1.S1_at--542--8171Chr09:3103581..3103605 (25 bp)
GGAACTGGACCTGCTGATAGGCCTC
LOC_Os09g06530
OsAffx.29733.1.S1_at--552--3691Chr09:3103554..3103578 (25 bp)
CTATGGACTGAGCTTTAGCGCCGTT
LOC_Os09g06530
OsAffx.29733.1.S1_at--627--10451Chr09:3103540..3103564 (25 bp)
TTAGCGCCGTTGATCACCATCTTCA
LOC_Os09g06530
OsAffx.29733.1.S1_at--104--9691Chr09:3103333..3103542 (25 bp)
TCACCGCAGAAACAAGAGCTCCGAG
LOC_Os09g06530
OsAffx.29733.1.S1_at--521--10871Chr09:3103282..3103306 (25 bp)
TTGGCACAATGCAGATGCCTTCCCT
LOC_Os09g06530
Target Sequence 
TTTTTCCGGATCTGAGGTCTTGGCTCTTGGCGGCGGTAAGCTCGGGTAAGCTGGGGTCGACGGCGGCGAACTTCACCTAC
ACGCTCCGCGCAGATTTAACATGCCATCATCCTCTGTACCATCGCGATGCCCCTGACGAGAAGGCAGCGATCGAGGAGGT
GCGCCCCACGCTAGATCGGGAGAAAGAGGTGAGCCCGTCGTGGCCCATAGAGCACCTCCGTCGCACCACCCGTGCAGATC
GGAGGATGGGACATCGTCCCTTGCTCTATGAGGTGGTGGAACTGGACCTGCTGATAGGCCTCCCCTATGGACTGAGCTTT
AGCGCCGTTGATCACCATCTTCACCGCAGAAACAAGAGCTCCGAGGCAAAGCAAGAGTGTGCTGTAGAAGCTTGGCACAA
TGCAGATGCCTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis