Browse Element(s) Details


OsAffx.24386.2.S1_at

Description tigr:9637.m00412
TID=OsAffx.24386.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0658011/11expressed protein
LOC_Os02g224602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06530OsAffx.29733.1.S1_at11/119+3103108..3104511hypothetical protein
LOC_Os09g06540OsAffx.2022.1.S1_at1/119+3108254..3110685retrotransposon protein, putative, unclassified
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified
LOC_Os09g06560Os.53771.1.A2_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06560Os.53771.1.A1_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06570Os.50216.1.S1_at11/119+3125678..3126160expressed protein
LOC_Os09g06580OsAffx.24386.2.S1_at11/119+3128207..3129193expressed protein
LOC_Os09g06590OsAffx.29734.1.S1_at11/119+3130087..3131619hypothetical protein
LOC_Os09g06600NANA9+3132719..3135097retrotransposon protein, putative, unclassified
LOC_Os09g06610NANA9+3135411..3136990retrotransposon protein, putative, unclassified
LOC_Os09g06620OsAffx.17579.1.S1_at11/119+3138079..3139353F-box domain containing protein, expressed
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24386.2.S1_at--1095--3171Chr09:3128626..3128650 (25 bp)
CAATTGTTGGTCAGGCTTCATCGTC
LOC_Os09g06580
OsAffx.24386.2.S1_at--29--10532Chr09:3128642..3128666 (25 bp)
TTCATCGTCGACCATCGGAAGACTG
LOC_Os09g06580
OsAffx.24386.2.S1_at--120--6312Chr09:3128678..3128702 (25 bp)
GATGAGGAACATGCTGCCTTTCTTT
LOC_Os09g06580
OsAffx.24386.2.S1_at--399--6811Chr09:3128723..3128747 (25 bp)
GTTTTCTATGGGTCTACTTGTGCAC
LOC_Os09g06580
OsAffx.24386.2.S1_at--72--3331Chr09:3128765..3128789 (25 bp)
CACTTCGCTGAAGCCCTGGTGAGAA
LOC_Os09g06580
OsAffx.24386.2.S1_at--684--9651Chr09:3128833..3128857 (25 bp)
TCAGATGTTACATGTTTCCTCAGCC
LOC_Os09g06580
OsAffx.24386.2.S1_at--719--10671Chr09:3128848..3128872 (25 bp)
TTCCTCAGCCGGTATACTTCTAAAT
LOC_Os09g06580
OsAffx.24386.2.S1_at--460--4191Chr09:3128969..3128993 (25 bp)
GCCTTCCCCAAATATGACTCTAATG
LOC_Os09g06580
OsAffx.24386.2.S1_at--793--1271Chr09:3128995..3129019 (25 bp)
AGATCAATCAGAATCCCGGTCGTGC
LOC_Os09g06580
OsAffx.24386.2.S1_at--796--3031Chr09:3129006..3129030 (25 bp)
AATCCCGGTCGTGCAAGTCTTATAG
LOC_Os09g06580
OsAffx.24386.2.S1_at--889--7731Chr09:3129053..3129077 (25 bp)
GGTGTCAAGCCATCCGTTGAAGGTT
LOC_Os09g06580
Target Sequence 
CAATTGTTGGTCAGGCTTCATCGTCGACCATCGGAAGACTGGTCTAGTTTCGGATGAGGAACATGCTGCCTTTCTTTCCC
TATGGCTTGAGAGGTTTGTTTTCTATGGGTCTACTTGTGCACCGACTGCGAACTTCCTTCACTTCGCTGAAGCCCTGGTG
AGAAAGGAAAAAATTCCTCTTGGCCGATACCTCCTAGGGGCAACTTATCAGATGTTACATGTTTCCTCAGCCGGTATACT
TCTAAATAAACCGGTCAGTTATGGGGGCCCTTGGTGGTTCATTCAGCTGTGGTTGACAATTCACACCAACACCGTGGCCA
ACAGACCTTCCCTGCTTGAATCGGCCTTCCCCAAATATGACTCTAATGAAGATCAATCAGAATCCCGGTCGTGCAAGTCT
TATAGGGAAGCAGCTTCAGTTTACCATGGTGTCAAGCCATCCGTTGAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24386.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis